cluster # 5022

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Anopheles gambiae
cluster # 5022 cluster # 5022 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5022#0 length = 763 sequences # 2

consensus_5022#1 length = 473 sequences # 1
consensus_5022#2 length = 393 sequences # 1

consensusID : consensus_5022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 763
fasta sequence

                              [GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAGCAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAGCAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGG------CAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGGGCGAAACGGTGAACCTG]

[+] EMBL AGA285287            [GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAGCAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAGCAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGG      CAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGC                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM588137             [                                                                                                                                    ccgGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGGCAGCGTCAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGGGCGAAACGGTGAACCTG]




>consensus_5022#0
GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAG
CAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAG
CAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCAC
GATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACG
ACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGC
GGTGGCAACGGCCGGTCAGACGGCAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGC
CGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCT
CAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGT
GATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGT
TCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGACTACCAGGG
GGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACC
ACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGAC
GACGGCGAGCAGCAGTGCCGAGCTGGGCGAAACGGTGAACCTG

consensusID : consensus_5022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTCCGAAACCTATGGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCAGAGTATGGCGACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACCGCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGCTGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGCGGCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGCGTCGAGGGTGGTTCACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACGCGAACAC]

[+] EMBL BX467697             [GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTCCGAAACCTATGGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCAGAGTATGGCGACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACCGCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGCTGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGCGGCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGCGTCGAGGGTGGTTCACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACGCGAACAC]




>consensus_5022#1
GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTCCGAAACCTATGGTTGGCTG
CACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCAGAGTATGGCGACTAATCCTT
TCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACCGCACAGTTACG
ATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGCTGCGCTACATC
GACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAG
AAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGCGGCCGCAGCCGGC
ACCTCAATAACGGACGGGCTGAGTGCGCTGAGCGTCGAGGGTGGTTCACCGCTGATGCTT
CCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACGCGAACAC

consensusID : consensus_5022#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGCTACTACGGTGGCGGTGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACGAGGAGGCGCGG]

[-] EMBL AGA283991            [CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGCTACTACGGTGGCGGTGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACGAGGAGGCGCGG]




>consensus_5022#2
CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGA
TTTATAGTAGAGAACCGAAGTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAAT
CGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGCTACTACGGTGGCGGTGGTCCG
CGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCG
TCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGT
GCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAG
GAGGTGGACACGTGCGACGACGAGGAGGCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5022#0      GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAG 60
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAG 120
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCAC 180
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACG 240
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      ACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGC 300
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      GGTGGCAACGGCCGGTCAGACGGCAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGC 360
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      ------------------------------------------------------------
                                                                                  

consensus_5022#0      CGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCT 420
consensus_5022#2      ------------------------------------------------------------
consensus_5022#1      -------GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTC--CGAAACCTAT 51
                                                                                  

consensus_5022#0      CAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGT 480
consensus_5022#2      ---------CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGT 51
consensus_5022#1      GGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCA--GAGTATGGC 109
                               **    * *  * *   *  *  *     ** * **  **  *  **  * 

consensus_5022#0      GATAGTAGATTTATAGTAGAGAACCGAAGTGCT-GCTGCTGCTGGTGGTGGTGGTG-GTG 538
consensus_5022#2      GATAGTAGATTTATAGTAGAGAACCGAAGTGCT-GCTGC---TGGTGGTGGTGGTG-GTG 106
consensus_5022#1      GACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACC 169
                      **       ***  ** *     *** *** *      *        *  *         

consensus_5022#0      GTTCGCCTGCGA-------ATCGTCCTACCACGTTGGCCGTACGTC----CACCGGCGGG 587
consensus_5022#2      GTTCGCCTGCGA-------ATCGTCCTACCACGTTGGCCGTACGTC----CACCGGCGGG 155
consensus_5022#1      GCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGC 229
                      *  *   * ***         **  *  ***   **  ******      ** *  * * 

consensus_5022#0      TGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGA-CCG 646
consensus_5022#2      TGG-CTACTACGGTGGCGGT---GGTCCGCGTACCACGCCACCACCACCGATGCGA-CCG 210
consensus_5022#1      TGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCG 289
                      **  ****   *  *  *           **      **  *  *   **  *  *  **

consensus_5022#0      AACCG------AACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTG 700
consensus_5022#2      AACCG------AACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTG 264
consensus_5022#1      AACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGC-G 348
                      *** *      ** *       *  ** *   * **  * *** * *     *   ** *

consensus_5022#0      ACGACTTCCACCATCACGACGACGG-CGAGCAGCA-GTGCCGAGCTGGGCGAAACGGTGA 758
consensus_5022#2      ACGACTTCCACCATCACGACGACGG-CGAGCAGCA-GTGCCGAGCTGCTCGACCGGGAGG 322
consensus_5022#1      GCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGC--GTCGAGGGTGGTT 406
                       *  *  **  ** * * *  **** ** ** *   * ** ****    ***    *   

consensus_5022#0      ACCTG------------------------------------------------------- 763
consensus_5022#2      TGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACG 382
consensus_5022#1      CACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACG 466
                        * *                                                       

consensus_5022#0      -----------
consensus_5022#2      AGGAGGCGCGG 393
consensus_5022#1      CGAACAC---- 473