These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [TCGGCCACGAGGGGGAAAGTGTGTGGGCCGACGGACGGCTCCTCACACTGTCTCGTTGTTTTTACTTTTCATTTATTACTTGGCTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTCTTCATTCTTCCAACAAAGAAGATAAACGTTTATTGTTGTATATTCTTTACAATTAATTTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGTAATATTTGGTTTAATCATTTGTGGTGTTACCCACTTTTTTCGTCTATTTCTCTAGTACCTGCTGTCTTGTATTGAGCTCTTNATGTTAATGTTTTNATATCATTTTTAGTGCCACGTGTGGGCCCCGGTTGGGAGAAGGNAATAATGTCTNAAACGAAGCAATTCGCGGAAGGCACACAATTTACGGTGAGATCANAGAGAANTGGAGCGATCATTGAGAAATCTNAAACTTGGCAAGTTTCAAATACTTTTGCTCCAAAAGAAACGTAACGGAATGTTAACGTAGCGGAGCGAACCGGGTTGNCGGGAAGGTGAAACGTCATGGTGTANTTAATGATNGATTCAAAGTGATAGGANAAGAGCTTTGGTCGGATGGTCTCNCCCACGGTTGTNCAACGAGAGAACAGAGACCTTAACGTTATT] [+] EMBL BX469569 [TCGGCCACGAGGGGGAAAGTGTGTGGGCCGACGGACGGCTCCTCACACTGTCTCGTTGTTTTTACTTTTCATTTATTACTTGGCTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTCTTCATTCTTCCAACAAAGAAGATAAACGTTTATTGTTGTATATTCTTTACAATTAATTTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGTAATATTTGGTTTAATCATTTGTGGTGTTACCCACTTTTTTCGTCTATTTCTCTAGTACCTGCTGTCTTGTATTGAGCTCTTNATGTTAATGTTTTNATATCATTTTTAGTGCCACGTGTGGGCCCCGGTTGGGAGAAGGNAATAATGTCTNAAACGAAGCAATTCGCGGAAGGCACACAATTTACGGTGAGATCANAGAGAANTGGAGCGATCATTGAGAAATCTNAAACTTGGCAAGTTTCAAATACTTTTGCTCCAAAAGAAACGTAACGGAATGTTAACGTAGCGGAGCGAACCGGGTTGNCGGGAAGGTGAAACGTCATGGTGTANTTAATGATNGATTCAAAGTGATAGGANAAGAGCTTTGGTCGGATGGTCTCNCCCACGGTTGTNCAACGAGAGAACAGAGACCTTAACGTTATT] consensusID : consensus_5023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence [CCGCAAAATACAGAATCTTAGTAGAAAATGTGAAGCCAGAAAAAAAAACTTTTAAAAAGCACACTGCAAATGTGCAAAAACACAACAAAAAATGAACCGTGTCTGACATGGAGCAACAAAAAAAAAAAAAGAATTATTATTAATAAGAGAGGGAAACCTATTTCCCAAATGGAAAGCAAATCAAGCTTTAGGAAGTTAGTTTATTCAACCATTCTTAGGGCTTGTGGTACGGGAGGAAAGATTACGGTACAGGTTTTACGTGCGCACGACACGGATTTATCTTCTTTTAGCAAACGCACAGCACAACTGGTAACAGTTTTTGTTGATTATGCTTTTAGTTATTGTTAGTTTCTCATACAAAAAAAGTATCATGACGTAGGGAAGTGTGTGGGCCGACGGACGGTCCTCACACTGTCTCGTTGTTTTTACCTTTCATTTATTACTTG-CTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTATTCTTTCTTCCAACAAAGAAGACTTTACGTTTATTTTTGTTTTCTTTACAATTAATTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGTAATTTTGGTTTTATC] [+] EMBL BM613612 [CCGCAAAATACAGAATCTTAGTAGAAAATGTGAAGCCAGAAAAAAAAACTTTTAAAAAGCACACTGCAAATGTGCAAAAACACAACAAAAAATGAACCGTGTCTGACATGGAGCAACAAAAAAAAAAAAAGAATTATTATTAATAAGAGAGGGAAACCTATTTCCCAAATGGAAAGCAAATCAAGCTTTAGGAAGTTAGTTTATTCAACCATTCTTAGGGCTTGTGGTTCGGGAGGAAAGATTTCGGAACAGGTTTTACGTGTGCACGACACGGATTTATCTTCCTTTAGCAAACGCACAGCACAACTGGTAACAGTTTTTGTTGATTATGCTTTTAGTTATTGTTAGTTTCTCATACAAAAAAAGTATCATGACGTAGGGAAGTGTGTGGGCCGACGGACGGTCCTCACACTGTCTCGTTGTTTTTACCTTTCATTTATTACTTG CTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTATTCTTTCTTCCAACAAAGAAGACTTTACGTTTATTTTTGTTTTCTTTACAATTAATTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGTAATTTTGGTTTTATC] [-] EMBL AGA284007 [ GCTTTAGGAAGTTAGTTTATTCAACCATTCTTAGGGCGTGTGGTACGGGAGGAAAGATTACGGTACAGGTTTTACGTGCGCACGACACGGATTTATCTTCTTTTGGCAAACGCACAGCACAACTGGTAACAGTTTTTGTTGATTATGCTTTTAGTTATTGTTAGTTTCTCATACAAAAAAAGTATCATGACGTAGGGAAGTGTGTGGGCCGACGGACGGTCCTCACACTGTCTCGTTGTTTTTACCTTTCATTTATTACTTGCCTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTATTCTTTCTTCCAACAAAGAAGACTTTACGTTTATTTTTGTTTTCTTTACAATTAATTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGTAAaaaaaa ] [+] EMBL BM586281 [ ccgGGTACGGGAGGAAAGATTACGGTACAGGTTTTACGTGCGCACGACACGGATTTATCTTCTTTTAGCAAACGCACAGCACAACTGGTAACAGTTTTTGTTGATTATGCTTTTAGTTATTGTTAGTTTCTCATACAAAAAAAGTATCATGACGTAGGGAAGTGTGTGGGCCGACGGACGGTCCTCACACTGTCTCGTTGTTTTTACTTTTCATTTATTACTTG CTACTTTAATTGCATTAATTTTATAGTTTTACAGTTTTCTTTTCTTCATTCTTCCAACAAAGAAGA TAAACGTTTATTGTTGTTTTCTTTACAATTAATTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5023#0 ---------TCGGCCACGAGGGGGAAAGTGTGTGGGCCGACGGACGGCTCCTCACACTGT 51 consensus_5023#1 CCGCAAAATACAGAATCTTAGTAGAAAATGTGAAGCCAGAAAAAAAAACTTTTAAAAAG- 59 * * * * **** **** * * ** * * * * * consensus_5023#0 CTCGTTGTTTTTACTTTTCATTTATTACTTGGCTACTTTAATTGCATTAATTTTATAGTT 111 consensus_5023#1 CACACTGCA---AATGTGCAAAAAC-ACAACAAAAAATGAACCGTGTC--TGACATGGAG 113 * * ** * * * ** * ** * * ** * * * ** * consensus_5023#0 TTACAGTTTTCTTTTCTTCATTCTT-CCAACAAAGAAGATAAACGTTTATTGTTGTATAT 170 consensus_5023#1 CAACAAAAAAAAAAAAAGAATTATTATTAATAAGAGAGGGAAACCTAT-TTCCCAAATGG 172 *** *** ** ** ** ** **** * * ** ** consensus_5023#0 TCTTTACAATTAATTTTCTGCTGGGTTTAATGTTCTCAATAAAATGTGTGGTTAGTGTTG 230 consensus_5023#1 AAAGCA-AATCAAGCTTTAG--GAAGTTAGTTTATTCAACCATTCTTAGGGCTTGTGGTA 229 * *** ** ** * * *** * * **** * * ** * *** * consensus_5023#0 TAATATTTGGTTTAATCATTTGTGGTGTTACCCACTTTTTTCGTCTATTTCTCTAGTACC 290 consensus_5023#1 CGGGAGGAAAGATTACGGTACA-GGTTTTACGTGCGCACGACACGGATTTATCTTCTTTT 288 * * * * *** **** * * **** *** * consensus_5023#0 TGCTGTCTTGTATTGAGCTCTTNATGTTAATGTTTTNATATCATTTTTAGTGCCACGTGT 350 consensus_5023#1 AGCAAAC--GCACAGCACAACTGGTAACAGTTTTTGTTGATTATGCTTTTAGTTAT-TGT 345 ** * * * * * * * * * *** ** ** ** * * *** consensus_5023#0 GGGCCCCGGTTGGGAGAAGGNAATAATGTCTNAAACGAAGCAATTCGCGGAAGGCACACA 410 consensus_5023#1 TAGTTTCTCATACAAAAAAAGTATCATGACGTAGG-GAAGTGTGTGGGCCGACGGACGGT 404 * * * * ** ** *** * * **** * * * * ** consensus_5023#0 ATTTACGGTGAGATCANAGAGAANTGGAGCGATCATTGAGAAATCTNAAACTTGGCAAGT 470 consensus_5023#1 CCTCACACTG----TCTCGTTGTTTTTACCTTTCATTTATTACTTGCTACTTTAATTGCA 460 * ** ** * * * * ***** * * * * ** consensus_5023#0 TTCAAATACTTTTGCTCCAAAAGAAACGTAACGGAATGTTAACGTAGCGGAGCGAACCGG 530 consensus_5023#1 TT--AATTTTATAGTTTTACAGTTTTCTT--TTATTCTTTCTTCCAACAAAGAAGACTTT 516 ** *** * * * * * * * * ** * * ** ** consensus_5023#0 GTTGNCGGGAAGGTGAAACGTCATGGTGTANTTAATGATNGATTCAAAGTGATAGGANAA 590 consensus_5023#1 ACGTTTATTTTTGTTTT-CTTTACAAT-TAATTTCTGCTGGGTTTAATGTTCTCA-ATAA 573 ** * * * * ** ** ** * * ** ** ** * * ** consensus_5023#0 GAGCTTTGGTCGGATGGTCTCNCCCACGGTTGTNCAACGAGAGAACAGAGACCTTAACGT 650 consensus_5023#1 AATGTGTGGTTAGT--GTTGTAATTTTGGTTTTATC------------------------ 607 * * **** * ** **** * consensus_5023#0 TATT 654 consensus_5023#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||