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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1807 fasta sequence
[ACCGGTTCTGTTTGCAAATTCTTCAGATTCCTCCATCTTTCTCAGACCTCCGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCGAGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGAAGGGCATCGTGCTGCCCGGCATCGGCGGCTTTACCATTGTGGACCATCGGCCCGTCACGGAGGAAGACGTTGGGTGTAACTTTTTCCTCGATCTCGACTCGGTCGGCCAGCCGAGGGCGAAACGGTGCATGCAGCTGCTGCAGGAGCTGAACCCGGACGTGAACGGCGACTACGTGGACGAGCACGTGGAACAGCTGATCGACGGGCAGCCGGATTTCTTCCGCAGCTTCGACGTGGTGGTCGCGACCTCGATCAGCGAGCGTACGATCATGCGCCTGTCCAACGTGCTGTGGGACCAAAACATACCGCTGATCGTGGCCCGGTCGGTAGGGTTCTATGGCGTTGCTAGGCTGCAGCTGCGCGAACATTGCATCGTCGAAACGCACCCGGACAACAAGCAGACGGATCTGCGGCTGGAGCACCCGTTCGAGGAGCTGAAGAAGCACATGGCGGAGGCGCAGATCACGAACAAGGTGCCGTGGCTGGTGGTGCTGTACAAGGTGCTGCAGGAGTGGGTCGACGCGCACGACGGCCAGTATCCGG-CCAGCTATCGCGAAAAGTCGGAGGTGCGGGA-CTGATCCGCTCGAAGATGGACGGTGAGCAGGAGAACTTTGAGGAGGCGATTAAAGCGGTCAACTCGAGCTTTGGCGGTGGCAAACCGTCGTCCGCCGTGCGGGAGATACTGCAAGACGATCGCTGCGTCAACGTCAACACCGAGAGCAATGCATTTTTGGATCATGGCACGTGCGCTGAAAGACTTTGTGGAT-ACGAAGGGAACGGGCTGCTGCCGGTGCCGGGCGTGCTGCCCGATATGACGGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGATGCCGAGATTGTGTTCCGCGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGATCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGTGCGCGGGACGAAGATAACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGCGAGCGTGCTGGAGCAGCCCAACTCGCTGATGGGCCACTACATCGTGTGCGCGCGCTGGACCGGTTTCAGGCGGACTATGGCTGTCTGCCGGGCGAGAGCGACCCCGAGTCGGACACGACCGGCATGAAAAGCATCGCGGCGAAGATGCTCAGCGATTGGGGCATCGGTACGCCGCTGAGCGATGATCTGGCGTACGAGATCTGCCGGTACGGTGGGGCGGAAATACACAGCATTTCGGCGTACCTGGGCGGCTGCATTGCGCACGAGCTGATCAAGCTCGTCACCAGACAGTACCGACCGTTCGACAATACGTTCATCTACGACGGCTCGACGTCGCAGACGGAAACCTATAAGTTATAATTGCTGTTAGCGCTAGTTTTCGTGATTAATTTCAAAACTCAACAAACACCCACACAACCACCACGCAGGCAGCATGTATGTGCGCGGCGGATGGTCCCTTTTAATATTAGAATACTGAAACACTGAAATAAATTTTT]
[+] EMBL CNS08OQA [ACCGGTTCTGTTTGCAAATTCTTCAGATTCCTCCATCTTTCTCAGACCTCCGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCGAGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGAAGGGCATCGTGCTGCCCGGCATCGGCGGCTTTACCATTGTGGACCATCGGCCCGTCACGGAGGAAGACGTTGGGTGTAACTTTTTCCTCGATCTCGACTCGGTCGGCCAGCCGAGGGCGAAACGGTGCATGCAGCTGCTGCAGGAGCTGAACCCGGACGTGAACGGCGACTACGTGGACGAGCACGTGGAACAGCTGATCGACGGGCAGCCGGATTTCTTCCGCAGCTTCGACGTGGTGGTCGCGACCTCGATCAGCGAGCGTACGATCATGCGCCTGTCCAACGTGCTGTGGGACCAAAACATACCGCTGATCGTGGCCCGGTCGGTAGGGTTCTATGGCGTTGCTAGGCTGCAGCTGCGCGAACATTGCATCGTCGAAACGCACCCGGACAACAAGCAGACGGATCTGCGGCTGGAGCACCCGTTCGAGGAGCTGAAGAAGCACATGGCGGAGGCGCAGATCACGAACAAGGTGCCGTGGCTGGTGGTGCTGTACAAGGTGCTGCAGGAGTGGGTCGACGCGCACGACGGCCAGTATCCGG CCAGCTATCGCGAAAAGTCGGAGGTGCGGGA CTGATCCGCTCGAAGATGGACGGTGAGCAGGAGAACTTTGAGGAGGCGATTAAAGCGGTCAACTCGAGCTTTGGCGGTGGCAAACCGTCGTCCGCCGTGCGGGAGATACTGCAAGACGATCGCTGCGTCAACGTCAACACCGAGAGCAATGCATTTTTGGATCATGGCACGTGCGCTGAAAGACTTTGTGGAT ACGAAGGGAAC ]
[+] EMBL BM646919 [ CGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCGAGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGAAGGGCATCGTGCTGCCCGGCAT ]
[-] EMBL CNS08OQB [ GACGGCCAGTATCCGGCCCAG TATCGCGAAAAGTCGGAGGTGCGGGAGCTGATCCGCTCGAAGATGGACGGTGAGCAGGAGAACTTTGAGGAGGCGATTAAAGCGGTCAACTCGAGCTTTGGCGGTGGCAAACCGTCGTCCGCCGTGCGGGAGATACTGCAAGACGATCGCTGCGTCAACGTCAACACCGAGAGCAATGCA TTTTGGATCATGGCACGTGCGCTGAAAGACTTTGTGGATAACGAAGGGAACGGGCTGCTGCCGGTGCCGGGCGTGCTGCCCGATATGACGGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGATGCCGAGATTGTGTTCCGCGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGATCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGTGCGCGGGACGAAGATAACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGCGAGCGTGCTGGAGCAGCCCAACTCGCTGATGGGCCACTACATCGTGTGCGCGCGCTGGACCGGTTTCAGGCGGACTATGGCTGTCTGCCGGGCGAGAGCGACCCCGAGTCGGACACGACCGGCATGAAAAGCATCGCGGCGAAGATGCTCAGCGATTGGGGCATCGGTACGCCGCTGAGCGATGATCTGGCGTACGAGATCTGCCGGTACGGTGGGGCGGAAATACACAGCATTTCGGCGTACCTGGGCGGCTGCATTGCGCACGAGCTGATCAAGCTCGTCACCAGACAGTACCGACCGTTCGACAATACGTTCATCTACGACGGCTCGACGTCGCAGACGGAAACCTATAAGTTATAATTGCTGTTAGCGCTAGTTTTCGTGATTAATTTCAAAACTCAACAAACACCCACACAACCACCACGCAGGCAGCATGTATGTGCGCGGCGGATGGTCCCTTTTAATATTAGAATACTGAAACACTGAAATAAATTTTT]
consensusID : consensus_5025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[AGGCAGAATCGGCACGTGGGTTGCAAAATTCTTCAGAATTCCTCCAATCTTTCCCAGACCGCCGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCGAGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGCCGGGCGTGCTGCCCGATATGACGGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGATGCCGAGATTGTGTTCCGGCGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGATCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGTGCGCGGGACGAAGATNACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGCGAGCGTGCTGGAGCAGCCCAAGCTCGCTGATGGGCCACTACAATCGGTGCTGCGCGCCGCTGGACCGGTTTCCAGGCCGGACTATGGCTTGTCTGCCGGGCGAGAGCGACCCGAGTCGNACACGAACGGCATGAAAGCATCGCGGCGAAAAAT]
[+] EMBL BX469794 [AGGCAGAATCGGCACGTGGGTTGCAAAATTCTTCAGAATTCCTCCAATCTTTCCCAGACCGCCGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCGAGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGCCGGGCGTGCTGCCCGATATGACGGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGATGCCGAGATTGTGTTCCGGCGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGATCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGTGCGCGGGACGAAGATNACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGCGAGCGTGCTGGAGCAGCCCAAGCTCGCTGATGGGCCACTACAATCGGTGCTGCGCGCCGCTGGACCGGTTTCCAGGCCGGACTATGGCTTGTCTGCCGGGCGAGAGCGACCCGAGTCGNACACGAACGGCATGAAAGCATCGCGGCGAAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5025#0 ACCGGTTCTGTTTGCAAATTCTTCAGATTCCTCCATCTTTCTCAGACCTCCGCTGCGTCG 60
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 TTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACCATGTCTTCGCCGGCACCGA 120
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 AATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGGCAAATCAGGCTTTGGGGCG 180
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 AGCATGGTCAAACGGTGCTGGAAAATGCGCAGATCTGCCTGATCAACGCTACAGCGCTCG 240
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 GCACCGAGATACTGAAGGGCATCGTGCTGCCCGGCATCGGCGGCTTTACCATTGTGGACC 300
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 ATCGGCCCGTCACGGAGGAAGACGTTGGGTGTAACTTTTTCCTCGATCTCGACTCGGTCG 360
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 GCCAGCCGAGGGCGAAACGGTGCATGCAGCTGCTGCAGGAGCTGAACCCGGACGTGAACG 420
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 GCGACTACGTGGACGAGCACGTGGAACAGCTGATCGACGGGCAGCCGGATTTCTTCCGCA 480
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 GCTTCGACGTGGTGGTCGCGACCTCGATCAGCGAGCGTACGATCATGCGCCTGTCCAACG 540
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 TGCTGTGGGACCAAAACATACCGCTGATCGTGGCCCGGTCGGTAGGGTTCTATGGCGTTG 600
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 CTAGGCTGCAGCTGCGCGAACATTGCATCGTCGAAACGCACCCGGACAACAAGCAGACGG 660
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 ATCTGCGGCTGGAGCACCCGTTCGAGGAGCTGAAGAAGCACATGGCGGAGGCGCAGATCA 720
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 CGAACAAGGTGCCGTGGCTGGTGGTGCTGTACAAGGTGCTGCAGGAGTGGGTCGACGCGC 780
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 ACGACGGCCAGTATCCGGCCAGCTATCGCGAAAAGTCGGAGGTGCGGGACTGATCCGCTC 840
consensus_5025#1 -----AGGCAGAATCGGCACGTGGGTTGC-AAAATTCTTCAGAATTCCTCCAATCT-TTC 53
* *** *** * * * ** **** ** * * *** **
consensus_5025#0 GAAGATGGACGGTGAGCAGGAGAACTTT----GAGGAGGCGATTA-AAGCGGTCA--ACT 893
consensus_5025#1 CCAGACCGCCGCTGCGTCGTTCTTTTTTCGGGGAGAAAAGCATTACAAACCAACATTACC 113
*** * ** ** * * *** *** * **** ** * ** **
consensus_5025#0 CGAGCTTTGGCGGTGGCAAACCGTCGTCCGCCGTGCGGGAGATACTGCAAG-ACGATCGC 952
consensus_5025#1 ATGTCTTCGCCGGCACCGAAATCTCCCGAACTGTCGGACAAAAGCCGCAAATATGATCGG 173
*** * *** * ** ** * ** * * * * **** * *****
consensus_5025#0 TGCGTCAACGTCAACACCGAGAGCAATGCATTTTTGGATCATGGCACGTGCGCTGAAAGA 1012
consensus_5025#1 CAAATCAGGCTTTGGGGCGAGCATGGTCAAAC----GGTGCTGGAAAATGCGCAGATCTG 229
*** * **** * * * * *** * ***** **
consensus_5025#0 CTTTGTGGATACGAAGGGAACGGGCTGCT-GCCGGTGCCGGGCGTGCTGCCCGATATGAC 1071
consensus_5025#1 CCTGATCAACGCTACAGCGCTCGGCACCGAGATACTGCCGGGCGTGCTGCCCGATATGAC 289
* * * * * * * *** * * *************************
consensus_5025#0 GGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGA 1131
consensus_5025#1 GGCCGACACGAACTCGTACATCAGCCTGCAAACGGTGTACCGCAATCAGGCGGCGCACGA 349
************************************************************
consensus_5025#0 TGCCGAGATTGTGTTCCG-CGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGA 1190
consensus_5025#1 TGCCGAGATTGTGTTCCGGCGTGCCCGCCAGCTGCTGAAAGAGCTGAACAAACCGAACGA 409
****************** *****************************************
consensus_5025#0 TCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGT 1250
consensus_5025#1 TCTCATCACCGACAAGGATGTGCGGCTGTTCTGTCGCGAGGCGGCCAACATTGCCGTCGT 469
************************************************************
consensus_5025#0 GCGCGGGACGAAGATAACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGC 1310
consensus_5025#1 GCGCGGGACGAAGATNACGGACGAGTTCGACAAGGGCTACCATCGGAGCTCGCACATTGC 529
*************** ********************************************
consensus_5025#0 GAGCGTGCTGGAGCAGCCCAA-CTCGCTGATGGGCCACTACATC--GTG-TGCGCGC-GC 1365
consensus_5025#1 GAGCGTGCTGGAGCAGCCCAAGCTCGCTGATGGGCCACTACAATCGGTGCTGCGCGCCGC 589
********************* ******************** *** ******* **
consensus_5025#0 TGGACCGGTTTCAGG--CGGACTATGGCT-GTCTGCCGGGCGAGAGCGACCCCGAGTCGG 1422
consensus_5025#1 TGGACCGGTTTCCAGGCCGGACTATGGCTTGTCTGCCGGGCGAGAGCGACCC-GAGTCGN 648
************ * ************ ********************** ******
consensus_5025#0 ACACGACCGGCATGAAAAGCATCGCGGCGAAGATGCTCAGCGATTGGGGCATCGGTACGC 1482
consensus_5025#1 ACACGAACGGCATGAAA-GCATCGCGGCGAAAAAT------------------------- 682
****** ********** ************* *
consensus_5025#0 CGCTGAGCGATGATCTGGCGTACGAGATCTGCCGGTACGGTGGGGCGGAAATACACAGCA 1542
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 TTTCGGCGTACCTGGGCGGCTGCATTGCGCACGAGCTGATCAAGCTCGTCACCAGACAGT 1602
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 ACCGACCGTTCGACAATACGTTCATCTACGACGGCTCGACGTCGCAGACGGAAACCTATA 1662
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 AGTTATAATTGCTGTTAGCGCTAGTTTTCGTGATTAATTTCAAAACTCAACAAACACCCA 1722
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 CACAACCACCACGCAGGCAGCATGTATGTGCGCGGCGGATGGTCCCTTTTAATATTAGAA 1782
consensus_5025#1 ------------------------------------------------------------
consensus_5025#0 TACTGAAACACTGAAATAAATTTTT 1807
consensus_5025#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||