cluster # 5028

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5028 cluster # 5028 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5028#0 length = 727 sequences # 3

consensus_5028#1 length = 562 sequences # 1

consensusID : consensus_5028#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 727
fasta sequence

                              [AGGCCAGAATCGCCACGAGGTCATAAAATGAAAAACAAACAAAACAACCAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT-TGTATCTTCTGCTACCTGT-TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT-GTTCGCTTTTAA-GACTTTACTCAAAG-TGTGTTTC-GATGACACTG-CTATACACAT-ACACAC-ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAAATCTTT]

[+] EMBL BX466613             [AGGCCAGAATCGCCACGAGGTCATAAAATGAAAAACAAACAAAACAACCAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTNATGTGCCTTGTAGGTA TTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTTCTGTATCTTCTGCTACCTGTNTTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCTGGTTCGCTTTTAAGGACTTTACTCAAAGCTGTGTTACGGATNACACTGCCTATACACATAACACACAATCT                                                                              ]
[+] EMBL BX628291             [                                                                                                                                                                               AGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT TGTATCTTCTGCTACCTGT TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT GTTCGCTTTTAA GACTTTACTCAAAG TGTGTTTC GATGACACTG CTATACACAT ACACAC ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAAATCTTT]
[+] EMBL BX610671             [                                                                                                                                                                                                                                                                                                                                                                                                                                     CACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT TGTATCTTCTGCTACCTGT TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT GTTCGCTTTTAA GACTTTACTCAAAG TGTGTTTC GATGACACTG CTATACACAT ACACAC ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAA      ]




>consensus_5028#0
AGGCCAGAATCGCCACGAGGTCATAAAATGAAAAACAAACAAAACAACCAAGGAAGTAAT
TGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATG
AGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAA
AGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCT
TAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAG
GTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCT
CTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAG
CCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTC
TTACATAAGACTTACATTGAATTGAGTTTAGTTTGTATCTTCTGCTACCTGTTTTACACA
TAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCTGTTCGCTTTTAAGAC
TTTACTCAAAGTGTGTTTCGATGACACTGCTATACACATACACACATCTTACATCTACAA
AACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAA
AATCTTT

consensusID : consensus_5028#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATCATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAAAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACA]

[+] EMBL BX617589             [ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATCATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAAAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACA]




>consensus_5028#1
ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATC
ATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAAAAGGA
AGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAA
CAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAA
AAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTT
ATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTT
TTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCAC
TGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTG
TTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTG
ACACTCTTACATAAGACTTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5028#0      ------------------------------------------------------------
consensus_5028#1      ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATC 60
                                                                                  

consensus_5028#0      -------AGGCCAGAATCGCCACGAGG-TCATAAAATGAAAAACAAACAAAACAACCAAG 52
consensus_5028#1      ATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAA--AAG 118
                                  * ***    * **   ***************************  ***

consensus_5028#0      GAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAG 112
consensus_5028#1      GAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAG 178
                      ************************************************************

consensus_5028#0      AACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGG 172
consensus_5028#1      AACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGG 238
                      ************************************************************

consensus_5028#0      AAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTG 232
consensus_5028#1      AAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTG 298
                      ************************************************************

consensus_5028#0      TTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAG 292
consensus_5028#1      TTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAG 358
                      ************************************************************

consensus_5028#0      TTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGC 352
consensus_5028#1      TTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGC 418
                      ************************************************************

consensus_5028#0      ACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACG 412
consensus_5028#1      ACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACG 478
                      ************************************************************

consensus_5028#0      TGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTG 472
consensus_5028#1      TGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTG 538
                      ************************************************************

consensus_5028#0      TGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTTTGTATCTTCTGCTACCTGT 532
consensus_5028#1      TGACACTCTTACATAAGACTTACA------------------------------------ 562
                      ************************                                    

consensus_5028#0      TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCTGTTCGCT 592
consensus_5028#1      ------------------------------------------------------------
                                                                                  

consensus_5028#0      TTTAAGACTTTACTCAAAGTGTGTTTCGATGACACTGCTATACACATACACACATCTTAC 652
consensus_5028#1      ------------------------------------------------------------
                                                                                  

consensus_5028#0      ATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCG 712
consensus_5028#1      ------------------------------------------------------------
                                                                                  

consensus_5028#0      AAATGTAAAATCTTT 727
consensus_5028#1      ---------------