These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence [TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGTACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCAGCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCGCCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTTCCTGCCGCTGCGTGCGCGACTGGAAGGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCGCCCGAACCGGGCACGATCAGTGACACGAAGCCCTTCGCCGTGCCTACGCCGAGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGGATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACGTTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT] [+] EMBL AGA284294 [TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGTACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCT ] [+] EMBL BX627479 [ CGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCTAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGCACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTGATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCAGCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCGCCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTTCCTGCCGCTGCGTGCGCGACTGGAAGGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCGCCCGAACCGGGCACGATCAGTGACACGAAGCCCTTCGCCGTGCCTACGCCGAGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGGATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACGTTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT] consensusID : consensus_5031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGATTCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAATGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGGCCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGATAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTGTGTCATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTG-TCCC-TTTTCCTCAGTTA-TTACCAATCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT] [-] EMBL CNS08NAO [AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGATTCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAATGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGGCCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGATAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTGTGTCATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTG TCCC TTTTCCTCAGTTA TTACCAATCAG ] [+] EMBL CNS08NAP [ ATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGAAAGCCTCATTGACCGAGTGGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTTTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTTTTTTATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTGTTCCCTTTTTCCTCAGTTATTTACATTTCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5031#0 -----TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAG 55 consensus_5031#1 AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGAT 60 * *** *** * ** **** ** *** * * * ** consensus_5031#0 CAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGA 115 consensus_5031#1 TCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAA 120 * * ** * * * ** *** ** * * * * consensus_5031#0 AGCG-ATCCAGTACACTTTTC---GGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGT 171 consensus_5031#1 TGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGG 180 ** * **** *** *** * * * * * * **** * consensus_5031#0 GCTTTGGCTTCATCTTCTG-CCAACAGCTTCTCCTTGATCTGCCGCA-ACTCGTTC---G 226 consensus_5031#1 CCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGA 240 * * **** * * * * * * * *** * * * * * consensus_5031#0 CTGTCTCGCGGA---AGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCT 283 consensus_5031#1 TAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATG---TCGGACA 297 * *** ** ** * ** **** * * * * ****** * ** * consensus_5031#0 TCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCA 343 consensus_5031#1 CC-AGCTTCATTAGCGACTCGCCGGCCCGTA--CAATGTTGGCCGCCCGGACCTGCGTTT 354 * ** * * *** * *** * * * ** **** ** * * * consensus_5031#0 GCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCG 403 consensus_5031#1 CATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGC-TGTGT-----GTCATTCTCGC 408 * * * ******* * *** * *** * *** *** *** consensus_5031#0 CCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTT 463 consensus_5031#1 CCTTGGCAAGCCGGATTATTTCTTCAAAA---TTTTCCCGCATACTCCGAATGTCCTCTT 465 ** *** *** * *** * * ****** *** ** * * ******* consensus_5031#0 CCTGCCGCTGCGTGCGCGACTGGAA-GGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCG 522 consensus_5031#1 TCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCA 525 * **** ** ** * * ** * * **** * **** * * ** * * consensus_5031#0 C-CCGAACCGGGCACGATCAGT--GACACGAAGCC------CTTCGCCGTGCCTACGCCG 573 consensus_5031#1 TATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAA 585 ** *** ** * * ** * *** ***** * ** consensus_5031#0 AGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGG 633 consensus_5031#1 AAGCTAAAATTCTGCGGGA------GAATGCT-AAAATTGTCCCTTTTCCTCAGTTATTA 638 * * * * **** ******* **** * ** ** * ** consensus_5031#0 ATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACG 693 consensus_5031#1 CCAATCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT---------- 688 * * ** ** * * ** * ** *** * * consensus_5031#0 TTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT 744 consensus_5031#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||