These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 656 fasta sequence [CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAATAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCATCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAGGA-GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA] [+] EMBL BM623381 [CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAATAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCATCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAGGACAAAAAACCGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTGGCACAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAA ] [+] EMBL BX626299 [ TTGGCTTANTTT CATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAAGA GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCANGGAAGCTAAATAAAAGCC ] [-] EMBL AGA284312 [ GCACCACATTGTGAAATTAAGGA GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA] consensusID : consensus_5032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TTTTTTAACCGATTTATCAACTAGTTCAACTTCAGGCTTGCATTTGCTACCCAGAAATAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG] [+] EMBL AGA285615 [TTTTTTAACCGATTTATCAACTAGTTCAACTTCAGGCTTGCATTTGCTACCCAGAAATAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5032#0 ----CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAA 56 consensus_5032#1 TTTTTTAACCGA--TTTATCAACTA-GTTCAACTTCAGGCTTGCATTTGCTACCCAGAAA 57 **** * * **** * * * * ******************* consensus_5032#0 TAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTC 116 consensus_5032#1 TAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTC 117 ********** **************************** ******************** consensus_5032#0 GCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCA 176 consensus_5032#1 GCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCA 177 ************************************************** ** ****** consensus_5032#0 TCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCC 236 consensus_5032#1 TCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCC 237 ******* **************************************************** consensus_5032#0 ACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAA 296 consensus_5032#1 ACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAA 297 *********** ********************************** ************* consensus_5032#0 TTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTG 356 consensus_5032#1 TTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG------------ 345 **************** * ***************************** consensus_5032#0 TGCACCACATTGTGAAATTAAGGAGGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCC 416 consensus_5032#1 ------------------------------------------------------------ consensus_5032#0 GGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTC 476 consensus_5032#1 ------------------------------------------------------------ consensus_5032#0 GGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAG 536 consensus_5032#1 ------------------------------------------------------------ consensus_5032#0 CGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCT 596 consensus_5032#1 ------------------------------------------------------------ consensus_5032#0 GCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA 656 consensus_5032#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||