These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 428 fasta sequence [CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACACTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCAAACGTTCGCAACCTCAACAAACCGCTGT] [+] EMBL CNS092Q7 [CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACATTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCA ] [+] EMBL CNS09BLQ [ GATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGACCCCCCCAACACc ] [+] EMBL AGA284916 [ CCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACCGTGGCTGTCATCTGGCGCTAGGTGTGCGCTGCCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGAAAACGTTCGCAACCTCAACAAACCGCTGT] consensusID : consensus_5051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [TTCAAAAAAAATTCACAAAACAAACGGAGAGCAAAGATTGCTGCGCTGTTCTGGCAGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCCCCCC] [+] EMBL CNS08DZW [TTCAAAAAAAATTCACAAAACAAACGGAGAGCAAAGATTGCTGCGCTGTTCTGGCAGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5051#0 CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCA 60 consensus_5051#1 ------------------------------------------------------------ consensus_5051#0 GGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGT 120 consensus_5051#1 ---TTCAAAAAAAATTCACAAAACAAACGGAGA--GCAAAGATTGCTGCGCTGTTCTGGC 55 * * ** *** * * * *** * ** * * ** ** consensus_5051#0 TGCGTATTTTGTGC----GGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGT 176 consensus_5051#1 AGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGT 115 ** * **** ** ****************************************** consensus_5051#0 TCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACAC 236 consensus_5051#1 TCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACAC 175 ************************************************************ consensus_5051#0 TGCTCGAGCTGGCCGACACTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCG 296 consensus_5051#1 TGCTCGAGCTGGCCCCCCC----------------------------------------- 194 ************** * * consensus_5051#0 GCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCG 356 consensus_5051#1 ------------------------------------------------------------ consensus_5051#0 TGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCAAACGTTCGCAACCTCA 416 consensus_5051#1 ------------------------------------------------------------ consensus_5051#0 ACAAACCGCTGT 428 consensus_5051#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||