These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTTTGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATCGGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGCCTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAAGCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCTGGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGTATAATGCCATGATCGATTTCTTTCCCCGCATGAGG] [+] EMBL AL932111 [AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTTTGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATCGGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGCCTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAAGCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCTGGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGTATAATGCCATGATCGATTTCTTTCCCCGCATGAGG] consensusID : consensus_5063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 495 fasta sequence [CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTATGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGC] [+] EMBL BM641616 [CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTATGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACCCGGTGCGGTATCGGCAAGCTGATGCTGTTCGACTACGACAAGGTTGAGCTGGCGAATATGAATCGACTATTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGC] [+] EMBL AGA285510 [ AAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATCGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACA ] [+] EMBL AL933360 [ tttAAAGAGTGTGGCCGTTGTCCGCGT NGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGC AGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTG TCTTTACCCCGGACCA GCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTAC ACATCACGACGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5063#0 ------------------------------------------------------------ consensus_5063#1 CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTA 60 consensus_5063#0 ------------------------------------------------------------ consensus_5063#1 TGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAG 120 consensus_5063#0 ------------------------------------------------------------ consensus_5063#1 AAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGA 180 consensus_5063#0 ---------AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGG 51 consensus_5063#1 AAGAGTACGAGCGGATCCG--GCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGG 238 * * *** * ************************************ consensus_5063#0 TAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTA 111 consensus_5063#1 TAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTA 298 ************************************************************ consensus_5063#0 CGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTT 171 consensus_5063#1 CGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTT 358 ************************************************************ consensus_5063#0 GTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCAC 231 consensus_5063#1 GTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCAC 418 ************************************************************ consensus_5063#0 CACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCG 291 consensus_5063#1 CACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCG 478 ************************************************************ consensus_5063#0 CACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTT 351 consensus_5063#1 CACGGGCGGCATCGAGC------------------------------------------- 495 ***************** consensus_5063#0 TGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATC 411 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 GGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGC 471 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 CTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAA 531 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 GCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCT 591 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 GGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGT 651 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 ATAATGCCATGATCGATTTCTTTCCCCGCATGAGG 686 consensus_5063#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||