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Anopheles gambiae
cluster # 5070 cluster # 5070       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5070#0 length = 784 sequences # 1  
consensus_5070#1 length = 703 sequences # 1  
consensus_5070#2 length = 612 sequences # 2  

consensusID : consensus_5070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence
                              [GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC]

[+] EMBL AL692114             [GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC]


>consensus_5070#0 GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACT AGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCAT CAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCT ATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCG CAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATA TTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGT CCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCAC ACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACA CACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNN CNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTA AGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCC CCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGG GCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCG TAAC



consensusID : consensus_5070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC]

[+] EMBL BX608126             [GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC]


>consensus_5070#1 GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATG CAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTA ATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCT TTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCT GATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTA AATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAA AAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACC GGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAAC AAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGT GTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAAT TGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAA CATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC



consensusID : consensus_5070#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 612
fasta sequence
                              [CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC-AAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT]

[+] EMBL BX617160             [CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC AAAAAGTTGATCATCAG                                                                                                                               ]
[+] EMBL BX618741             [                                                                                                                                                                                                                                                   TTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT]


>consensus_5070#2 CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAAC CATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATG CGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTT AATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGG GTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAA AAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAG ATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGC ACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAGTTGATC ATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATC GCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGAC GGCTAGCTTAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5070#1      ------------------------------------------------------------
consensus_5070#2      CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAAC 60
consensus_5070#0      -GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCAC 59
                                                                                  

consensus_5070#1      ------------------------------------------------------------
consensus_5070#2      CATGCCTAC-GTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGT-GCTAA 118
consensus_5070#0      TAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCA 119
                                                                                  

consensus_5070#1      ------------------------------------GCCGAAGGATATCAAAAGTATCCG 24
consensus_5070#2      TGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCG 178
consensus_5070#0      TCAGAACAACAAACAAAAATTAACAAAAAAA-AAAACAAGAAAACTCTTTACAATGTCCG 178
                                                             ***   * *  * * * ****

consensus_5070#1      TTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 84
consensus_5070#2      TTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 238
consensus_5070#0      CTATAACTATCGCAATGCAGATCGAAGATCACCG-GCTAGAGGACCCGGCATTAGGAAGG 237
                       *   *   *  *  *   *     * *   **  ** *****      ** ** *****

consensus_5070#1      GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGG 144
consensus_5070#2      GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGT 298
consensus_5070#0      TCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTG 297
                        *      *   * *  *****  * *  **** ** **  *** * * *** *     

consensus_5070#1      AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 203
consensus_5070#2      AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 357
consensus_5070#0      ATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCA 357
                      * *         *      *  ** * *     *  * * *      **      **  *

consensus_5070#1      AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 258
consensus_5070#2      AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 412
consensus_5070#0      AGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGAC 417
                      *        *    **    * * *** *  ** **  ** ***  * *   *   **  

consensus_5070#1      CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 316
consensus_5070#2      CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 470
consensus_5070#0      CACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACAT 477
                      ** *    *     * ***          *    ** *   * * **  ***  * *** 

consensus_5070#1      AAAAGTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCT 375
consensus_5070#2      AAA-GTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAT---CTAGAACGCGC- 524
consensus_5070#0      ACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCC 537
                      * *     *    *****        ** *     ** *    *        *   * * 

consensus_5070#1      TTACAATGTCCGCTATAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 431
consensus_5070#2      -------GGCCGCTCCAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 573
consensus_5070#0      ------TNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTC 591
                               *      ***  *      ***  **   ***  *       * * *   *

consensus_5070#1      CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGTGAATCCAAACAAA 483
consensus_5070#2      CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGT------------- 612
consensus_5070#0      AAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGC 651
                          ** ** * ***      *** **     ** ** *  *  * *             

consensus_5070#1      ACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTA 543
consensus_5070#2      ------------------------------------------------------------
consensus_5070#0      CGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCA 711
                                                                                  

consensus_5070#1      GGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGC 603
consensus_5070#2      ------------------------------------------------------------
consensus_5070#0      ACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAA 771
                                                                                  

consensus_5070#1      ATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACAT 663
consensus_5070#2      ------------------------------------------------------------
consensus_5070#0      ACCCTGGCGTAAC----------------------------------------------- 784
                                                                                  

consensus_5070#1      AGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC 703
consensus_5070#2      ----------------------------------------
consensus_5070#0      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)