These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence [GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC] [+] EMBL AL692114 [GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC] consensusID : consensus_5070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC] [+] EMBL BX608126 [GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC] consensusID : consensus_5070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence [CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC-AAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT] [+] EMBL BX617160 [CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC AAAAAGTTGATCATCAG ] [+] EMBL BX618741 [ TTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5070#1 ------------------------------------------------------------ consensus_5070#2 CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAAC 60 consensus_5070#0 -GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCAC 59 consensus_5070#1 ------------------------------------------------------------ consensus_5070#2 CATGCCTAC-GTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGT-GCTAA 118 consensus_5070#0 TAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCA 119 consensus_5070#1 ------------------------------------GCCGAAGGATATCAAAAGTATCCG 24 consensus_5070#2 TGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCG 178 consensus_5070#0 TCAGAACAACAAACAAAAATTAACAAAAAAA-AAAACAAGAAAACTCTTTACAATGTCCG 178 *** * * * * * **** consensus_5070#1 TTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 84 consensus_5070#2 TTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 238 consensus_5070#0 CTATAACTATCGCAATGCAGATCGAAGATCACCG-GCTAGAGGACCCGGCATTAGGAAGG 237 * * * * * * * * ** ** ***** ** ** ***** consensus_5070#1 GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGG 144 consensus_5070#2 GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGT 298 consensus_5070#0 TCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTG 297 * * * * ***** * * **** ** ** *** * * *** * consensus_5070#1 AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 203 consensus_5070#2 AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 357 consensus_5070#0 ATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCA 357 * * * * ** * * * * * * ** ** * consensus_5070#1 AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 258 consensus_5070#2 AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 412 consensus_5070#0 AGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGAC 417 * * ** * * *** * ** ** ** *** * * * ** consensus_5070#1 CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 316 consensus_5070#2 CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 470 consensus_5070#0 CACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACAT 477 ** * * * *** * ** * * * ** *** * *** consensus_5070#1 AAAAGTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCT 375 consensus_5070#2 AAA-GTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAT---CTAGAACGCGC- 524 consensus_5070#0 ACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCC 537 * * * ***** ** * ** * * * * * consensus_5070#1 TTACAATGTCCGCTATAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 431 consensus_5070#2 -------GGCCGCTCCAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 573 consensus_5070#0 ------TNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTC 591 * *** * *** ** *** * * * * * consensus_5070#1 CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGTGAATCCAAACAAA 483 consensus_5070#2 CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGT------------- 612 consensus_5070#0 AAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGC 651 ** ** * *** *** ** ** ** * * * * consensus_5070#1 ACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTA 543 consensus_5070#2 ------------------------------------------------------------ consensus_5070#0 CGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCA 711 consensus_5070#1 GGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGC 603 consensus_5070#2 ------------------------------------------------------------ consensus_5070#0 ACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAA 771 consensus_5070#1 ATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACAT 663 consensus_5070#2 ------------------------------------------------------------ consensus_5070#0 ACCCTGGCGTAAC----------------------------------------------- 784 consensus_5070#1 AGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC 703 consensus_5070#2 ---------------------------------------- consensus_5070#0 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||