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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 784 fasta sequence
[GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC]
[+] EMBL AL692114 [GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCACTAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAAGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGACCACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACATACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCCTNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTCAAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGCCGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCAACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAAACCCTGGCGTAAC]
consensusID : consensus_5070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC]
[+] EMBL BX608126 [GCCGAAGGATATCAAAAGTATCCGTTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCTTTACAATGTCCGCTATAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGCATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACATAGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC]
consensusID : consensus_5070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence
[CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC-AAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT]
[+] EMBL BX617160 [CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAACCATGCCTACGTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGTGCTAATGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCGTTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGGGGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGTAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAAC AAAAAGTTGATCATCAG ]
[+] EMBL BX618741 [ TTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGGAAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTGACTGTTGATAACGTAAAGAAAAGATAAAAGAGCGTATAAAAGAGCGATGTTGAAGCTGATTCTTTTTGATAGTAGCAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAGTTGATCATCAGAACAACAAACAAAAATTAACAAAAAAATCTAGAACGCGCGGCCGCTCCAACTATCGCAATGCAGATCGAAGATCACCGGCTAGAGGACCCGGCATTAGGAAGGTCGCAAGCAGACGGCTAGCTTAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5070#1 ------------------------------------------------------------
consensus_5070#2 CAGGCAGGGGGTAATGCTTTCCTTGCCCGTGAGCCTGTTTTGCCCGTCAGCCTATTGAAC 60
consensus_5070#0 -GCAGATCGCCCGAGGTTGATGTTGAAGCTGATTCTTTTCTGATAGTANGCAAATGGCAC 59
consensus_5070#1 ------------------------------------------------------------
consensus_5070#2 CATGCCTAC-GTAAGAGAGCCTACCTCTCCAAGTTGTTGTGAAGTGGAGGAGGT-GCTAA 118
consensus_5070#0 TAGGATAACCATATGGGAAAGTGATATGGTAAATGAAATTAAAACAAAAAAAGTTGATCA 119
consensus_5070#1 ------------------------------------GCCGAAGGATATCAAAAGTATCCG 24
consensus_5070#2 TGCGAAGGAAAAGGAAAACAGAACAAAGAAACAGAAGCCGAAGGATATCAAAAGTATCCG 178
consensus_5070#0 TCAGAACAACAAACAAAAATTAACAAAAAAA-AAAACAAGAAAACTCTTTACAATGTCCG 178
*** * * * * * ****
consensus_5070#1 TTTTTATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 84
consensus_5070#2 TTAATATATTATCCTTTTTGCCTAGAAAAAGCCATGCAAGAGGGTGTACCAGTATGAAGG 238
consensus_5070#0 CTATAACTATCGCAATGCAGATCGAAGATCACCG-GCTAGAGGACCCGGCATTAGGAAGG 237
* * * * * * * * ** ** ***** ** ** *****
consensus_5070#1 GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGG 144
consensus_5070#2 GGGTGTTTGGTTTGTTTTCTTAGCAATTGTAAACTAATCACCAAACCGAACAAGAGACGT 298
consensus_5070#0 TCGCAAGCAGACGGCTAGCTTAGTGAATCCAAACAAAACAAAAAATCCATCAACATTTTG 297
* * * * ***** * * **** ** ** *** * * *** *
consensus_5070#1 AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 203
consensus_5070#2 AAAAACAGAAAAAAAGAAAGAAAGAGAAAAATTGCTTTG-ACTGTTGATAACGTAAAGAA 357
consensus_5070#0 ATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTAGGAGAACCAATCGAACCAACCA 357
* * * * ** * * * * * * ** ** *
consensus_5070#1 AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 258
consensus_5070#2 AAGATAAAAGAGCGTATA--AAAGAGCGATGTTGAAGCTG-ATTCTTTTTGATAGTAG-- 412
consensus_5070#0 AGTCCTCTGGCTGCTACCGCAGAAAGCAAAATTTAATNTGCATTTCTCTCTCTCAAAGAC 417
* * ** * * *** * ** ** ** *** * * * **
consensus_5070#1 CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 316
consensus_5070#2 CAAATGGCACTAGGATAACCATATTGGGAAAGTGATATGGTAAATGA--AATTAAAACAA 470
consensus_5070#0 CACACAATATACACAAAACTTATCCTCACACAAAATCTTACACACGACAAATCCAGACAT 477
** * * * *** * ** * * * ** *** * ***
consensus_5070#1 AAAAGTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAAAAACAAGAAAACTCT 375
consensus_5070#2 AAA-GTTGATCATCAGAACA-ACAAACAAAAATTAACAAAAAAAT---CTAGAACGCGC- 524
consensus_5070#0 ACACACATACACGCAGAATGTGTCGNCATAGTACCACGANCGCANCACGTGCACAGCGCC 537
* * * ***** ** * ** * * * * *
consensus_5070#1 TTACAATGTCCGCTATAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 431
consensus_5070#2 -------GGCCGCTCCAACTATC----GCAATGCAGATCGAAGATCACCGGCTAGAGGAC 573
consensus_5070#0 ------TNNCNCACGCAACCGTTTAGAACAACCCACNACGAGAACATGTTCCCATACTTC 591
* *** * *** ** *** * * * * *
consensus_5070#1 CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGTGAATCCAAACAAA 483
consensus_5070#2 CCGGCATTAGGAAGGTC---GCAAGCAG----ACGGCTA-GCTTAGT------------- 612
consensus_5070#0 AAATCAGTAAGTAGGCTTAAACAAACAACACAACAGCNACACNCANTCCTACGAAACCGC 651
** ** * *** *** ** ** ** * * * *
consensus_5070#1 ACAAAAAATCCATCAACATTTGATATTGTTTCCTAGTTTTGGCGAGCGTATTGCGGTGTA 543
consensus_5070#2 ------------------------------------------------------------
consensus_5070#0 CGGCCGGCCCCGCCAACAGCCCTTATTACCCCTTTTTAGTGACGGGGTTTCAACTTCTCA 711
consensus_5070#1 GGAGAACCAATCGAACCAACCAACTCCTCTGCTGCTACCGCAGAAAGCAAATTTAATTGC 603
consensus_5070#2 ------------------------------------------------------------
consensus_5070#0 ACGCCTTGGGCCACCTGGGCCGCACGCTACTCTATCACCANCGTCGTGNNCTGGGAGAAA 771
consensus_5070#1 ATTTCTCTCTCTCAAAGACACACATATACACAAACTTACCCCAAATTTTTACTGTAACAT 663
consensus_5070#2 ------------------------------------------------------------
consensus_5070#0 ACCCTGGCGTAAC----------------------------------------------- 784
consensus_5070#1 AGTTTATACCATATATTCTCTTATCGCTGTCACGCGCATC 703
consensus_5070#2 ----------------------------------------
consensus_5070#0 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||