These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA------CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT--CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT] [+] EMBL AL934778 [ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTC ] [+] EMBL BX615552 [ GTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAAGGTGAGCTAAGAAAATTTCCAAACAGCTAG TATTAACATTGTATGCAGTGCAAACAAGACAATAATATTTAAAAAAAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTAGTGTTTCATACATT G T TTATACTTGTATGTCAAACCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACATTTTCATATATCAGCATAAGCGGTGAGTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT] consensusID : consensus_5073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT] [+] EMBL AL692120 [CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT] consensusID : consensus_5073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT] [+] EMBL BM651801 [CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5073#0 ---------------------------------------ATCGCCGAGGTTAATGTATCT 21 consensus_5073#1 CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCT 60 consensus_5073#2 -------------------------CCGAAATTACATGTTTTGCCATTCTTGCTTTG-CA 34 * * * * * consensus_5073#0 CTTAA-GTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 76 consensus_5073#1 CTTAAAGTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 116 consensus_5073#2 TACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGG 94 ** *** * * * * ** ***** **** ** * * * * * * consensus_5073#0 CAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTT 136 consensus_5073#1 CAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTT 176 consensus_5073#2 AAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAA-ATAG 153 * * *** ** * * * * *** ** *** * * * * * ** ** consensus_5073#0 CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATA 196 consensus_5073#1 CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTA-ATCGGAAGACATA 235 consensus_5073#2 CTAAGAAAAGTG-CTCCAAAGTGAAATCAAAGCGACAATAATCACA-----GTAAGCATG 207 *** * ** ** ** * ** *** *** ** * * * *** consensus_5073#0 AAGCCAACACATTAATAAGGATTTAAGACAA-TACTGAAGGCTGAAAGTAAATCAATGTT 255 consensus_5073#1 AAGCCAACACATTAATAAGGATTTAAGGCAA-TACTGAAGGCTGAAAGTAAATCAATGTT 294 consensus_5073#2 TGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAAT 267 * * * ** * ** * **** ** * ** * ** * ****** * consensus_5073#0 GGTTGGTGTGTAA-TATGA-GTAA-ACTGA-TGTGTACTATACCAATGAAAGACAATAAA 311 consensus_5073#1 GGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAA 354 consensus_5073#2 TTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAA-GTTTTAAC--ACACCATCAAA 324 * * * * * ** ***** * * ** * ** * ** *** consensus_5073#0 -TAAACAACAATATATTAA--TGACAAA--TAATAACAAAA---------AAGGTGAACT 357 consensus_5073#1 CTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCT 414 consensus_5073#2 GGATGTTACAGACTACTGGA-AAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACA 383 * *** ** * ** * * * * * * * * consensus_5073#0 AAGAAAA---TTTCCAAACAGCTAGCTATTAACAT-TGTA--TGCAGTGCAAACAAGACA 411 consensus_5073#1 AAGCAACAACTTTCCAAACAGCTAGCTATTAACAT-TGCTACTGCAGC-TGCACAACACA 472 consensus_5073#2 TGCGAATGTATCTCTTAA-AGTTAGCTGA-AACATATACTTTTATATT-TGTATTATATT 440 ** * ** ** ** ***** ***** * * * * * * consensus_5073#0 ATAATATTCTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACT 471 consensus_5073#1 NGCACANACTA-CATNTNTCNCCCCCCANC-CACANA-ACACTAAGGCAAACGCACT--- 526 consensus_5073#2 TATTTTCTTTATCAATCGATAGCAGCAGT--CGCCAAAGTATTGAAAAAAATAATTT--- 495 ** ** * * * * *** * consensus_5073#0 GTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTT 531 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 ATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCA 591 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 TAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAG 651 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 CTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATT 711 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 GTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGG 771 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 CTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATAT 831 consensus_5073#1 ------------------------------------------------------------ consensus_5073#2 ------------------------------------------------------------ consensus_5073#0 ATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT 877 consensus_5073#1 ---------------------------------------------- consensus_5073#2 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||