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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence
[ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA------CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT--CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT]
[+] EMBL AL934778 [ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTC ]
[+] EMBL BX615552 [ GTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAAGGTGAGCTAAGAAAATTTCCAAACAGCTAG TATTAACATTGTATGCAGTGCAAACAAGACAATAATATTTAAAAAAAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTAGTGTTTCATACATT G T TTATACTTGTATGTCAAACCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACATTTTCATATATCAGCATAAGCGGTGAGTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT]
consensusID : consensus_5073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT]
[+] EMBL AL692120 [CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT]
consensusID : consensus_5073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT]
[+] EMBL BM651801 [CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5073#0 ---------------------------------------ATCGCCGAGGTTAATGTATCT 21
consensus_5073#1 CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCT 60
consensus_5073#2 -------------------------CCGAAATTACATGTTTTGCCATTCTTGCTTTG-CA 34
* * * * *
consensus_5073#0 CTTAA-GTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 76
consensus_5073#1 CTTAAAGTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 116
consensus_5073#2 TACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGG 94
** *** * * * * ** ***** **** ** * * * * * *
consensus_5073#0 CAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTT 136
consensus_5073#1 CAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTT 176
consensus_5073#2 AAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAA-ATAG 153
* * *** ** * * * * *** ** *** * * * * * ** **
consensus_5073#0 CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATA 196
consensus_5073#1 CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTA-ATCGGAAGACATA 235
consensus_5073#2 CTAAGAAAAGTG-CTCCAAAGTGAAATCAAAGCGACAATAATCACA-----GTAAGCATG 207
*** * ** ** ** * ** *** *** ** * * * ***
consensus_5073#0 AAGCCAACACATTAATAAGGATTTAAGACAA-TACTGAAGGCTGAAAGTAAATCAATGTT 255
consensus_5073#1 AAGCCAACACATTAATAAGGATTTAAGGCAA-TACTGAAGGCTGAAAGTAAATCAATGTT 294
consensus_5073#2 TGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAAT 267
* * * ** * ** * **** ** * ** * ** * ****** *
consensus_5073#0 GGTTGGTGTGTAA-TATGA-GTAA-ACTGA-TGTGTACTATACCAATGAAAGACAATAAA 311
consensus_5073#1 GGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAA 354
consensus_5073#2 TTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAA-GTTTTAAC--ACACCATCAAA 324
* * * * * ** ***** * * ** * ** * ** ***
consensus_5073#0 -TAAACAACAATATATTAA--TGACAAA--TAATAACAAAA---------AAGGTGAACT 357
consensus_5073#1 CTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCT 414
consensus_5073#2 GGATGTTACAGACTACTGGA-AAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACA 383
* *** ** * ** * * * * * * * *
consensus_5073#0 AAGAAAA---TTTCCAAACAGCTAGCTATTAACAT-TGTA--TGCAGTGCAAACAAGACA 411
consensus_5073#1 AAGCAACAACTTTCCAAACAGCTAGCTATTAACAT-TGCTACTGCAGC-TGCACAACACA 472
consensus_5073#2 TGCGAATGTATCTCTTAA-AGTTAGCTGA-AACATATACTTTTATATT-TGTATTATATT 440
** * ** ** ** ***** ***** * * * * * *
consensus_5073#0 ATAATATTCTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACT 471
consensus_5073#1 NGCACANACTA-CATNTNTCNCCCCCCANC-CACANA-ACACTAAGGCAAACGCACT--- 526
consensus_5073#2 TATTTTCTTTATCAATCGATAGCAGCAGT--CGCCAAAGTATTGAAAAAAATAATTT--- 495
** ** * * * * *** *
consensus_5073#0 GTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTT 531
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 ATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCA 591
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 TAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAG 651
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 CTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATT 711
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 GTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGG 771
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 CTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATAT 831
consensus_5073#1 ------------------------------------------------------------
consensus_5073#2 ------------------------------------------------------------
consensus_5073#0 ATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT 877
consensus_5073#1 ----------------------------------------------
consensus_5073#2 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||