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Anopheles gambiae
cluster # 5073 cluster # 5073       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5073#0 length = 877 sequences # 2  
consensus_5073#1 length = 526 sequences # 1  
consensus_5073#2 length = 495 sequences # 1  

consensusID : consensus_5073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 877
fasta sequence
                              [ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA------CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT--CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT]

[+] EMBL AL934778             [ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAA      CTAAGAAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATT  CTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTGANTTTAAAGTATTC                                                                                                                                                                                                                                                                       ]
[+] EMBL BX615552             [                                                                                                                                                                                                                                                                                           GTGTACTATACCAATGAAAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAAGGTGAGCTAAGAAAATTTCCAAACAGCTAG TATTAACATTGTATGCAGTGCAAACAAGACAATAATATTTAAAAAAAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTAGTGTTTCATACATT G T TTATACTTGTATGTCAAACCCCAAAAACCTCTGTATGCTGCTTATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACATTTTCATATATCAGCATAAGCGGTGAGTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT]


>consensus_5073#0 ATCGCCGAGGTTAATGTATCTCTTAAGTTAGCTGAAACATATACTTTTATATTTGTATTA TATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGT ATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTG TAGATCGGAAAACATAAAGCCAACACATTAATAAGGATTTAAGACAATACTGAAGGCTGA AAGTAAATCAATGTTGGTTGGTGTGTAATATGAGTAAACTGATGTGTACTATACCAATGA AAGACAATAAATAAACAACAATATATTAATGACAAATAATAACAAAAAAGGTGAACTAAG AAAATTTCCAAACAGCTAGCTATTAACATTGTATGCAGTGCAAACAAGACAATAATATTC TAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACTGTTTCATAC ATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTTATTCGTAAA GCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCATAAACGGTG ANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAGCTAACCCAG CAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATTGTGTTAGAA ACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGGCTGAACAGT TATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATATATACACATT ATATACATAAAGTCAAATCAAAATCGAATATATTTAT



consensusID : consensus_5073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT]

[+] EMBL AL692120             [CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCCAACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAACAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANACTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT]


>consensus_5073#1 CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCT CTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAAT CGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTTCTAT AATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAATCGGAAGACATAAAGCC AACACATTAATAAGGATTTAAGGCAATACTGAAGGCTGAAAGTAAATCAATGTTGGTTGG TGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAACTAAAC AACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCTAAGCAA CAACTTTCCAAACAGCTAGCTATTAACATTGCTACTGCAGCTGCACAACACANGCACANA CTACATNTNTCNCCCCCCANCCACANAACACTAAGGCAAACGCACT



consensusID : consensus_5073#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence
                              [CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT]

[+] EMBL BM651801             [CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATCAAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATACTTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAAATAATTT]


>consensus_5073#2 CCGAAATTACATGTTTTGCCATTCTTGCTTTGCATACAATGTTGTTTAATAGTTTGACGT TTATTAAAATTTACATCTTTATAACATATTATGGAAGTAAATACGAGTGCTGCATATAAT GTTGTGAAACTAAAATATTTGGAAAACAAATAGCTAAGAAAAGTGCTCCAAAGTGAAATC AAAGCGACAATAATCACAGTAAGCATGTGTTCGAAAGCTTTAAAAAGCTTTATTTAAACT GATGCAAATAATAACTGAATCAAGAATTTTAGATAGCTTAGCCAGAAAATCTACTGACTA TATAAGTTTTAACACACCATCAAAGGATGTTACAGACTACTGGAAAACATAAGGATTTAT AGAGCAGAAGAAAATATCGTACATGCGAATGTATCTCTTAAAGTTAGCTGAAACATATAC TTTTATATTTGTATTATATTTATTTTCTTTATCAATCGATAGCAGCAGTCGCCAAAGTAT TGAAAAAAATAATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5073#0      ---------------------------------------ATCGCCGAGGTTAATGTATCT 21
consensus_5073#1      CCCCCGAGTTAAACATAGGATTTATAGAGCAGAAGAAATATCGTACATGCGAATGTATCT 60
consensus_5073#2      -------------------------CCGAAATTACATGTTTTGCCATTCTTGCTTTG-CA 34
                                                              * *          * *  * 

consensus_5073#0      CTTAA-GTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 76
consensus_5073#1      CTTAAAGTTAGCTGAAACATATACTTTTAT----ATTTGTATTATATTTATTTTCTTTAT 116
consensus_5073#2      TACAATGTTGTTTAATAGTTTGACGTTTATTAAAATTTACATCTTTATAACATATTATGG 94
                         ** ***   * * *  *  ** *****    ****  **  *  * *  *  * *  

consensus_5073#0      CAATCGATAGCAGCAGTCGCCAAAGTATTGAAAAAATAATTTGTATCAATATCATTATTT 136
consensus_5073#1      CAATCGATAGCAGCAGTCGCCAAAGTATTGAAGAAATAATTTGTATCAATATCATTATTT 176
consensus_5073#2      AAGTAAATACGAGTGCTGCATATAATGTTGTGAAACTAAAATATTTGGAAAACAA-ATAG 153
                       * *  ***  **   *    * * * ***   ** ***  * * *  * * **  **  

consensus_5073#0      CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTAGATCGGAAAACATA 196
consensus_5073#1      CTATAATAATTGATTCTTCTTTTCAACAAAAATATCAACGATTGTA-ATCGGAAGACATA 235
consensus_5073#2      CTAAGAAAAGTG-CTCCAAAGTGAAATCAAAGCGACAATAATCACA-----GTAAGCATG 207
                      ***  * ** **  **     *  **  ***    ***  **   *     * *  *** 

consensus_5073#0      AAGCCAACACATTAATAAGGATTTAAGACAA-TACTGAAGGCTGAAAGTAAATCAATGTT 255
consensus_5073#1      AAGCCAACACATTAATAAGGATTTAAGGCAA-TACTGAAGGCTGAAAGTAAATCAATGTT 294
consensus_5073#2      TGTTCGAAAGCTTTAAAAAGCTTTATTTAAACTGATGCAAATAATAACTGAATCAAGAAT 267
                          * * *  ** * ** * ****    ** *  ** *      ** * ******   *

consensus_5073#0      GGTTGGTGTGTAA-TATGA-GTAA-ACTGA-TGTGTACTATACCAATGAAAGACAATAAA 311
consensus_5073#1      GGTTGGTGTGTAACTATGACGTAACACTGACTGTGTACTATACCAATGAAAGACAATAAA 354
consensus_5073#2      TTTAGATAGCTTAGCCAGAAAATCTACTGACTATATAA-GTTTTAAC--ACACCATCAAA 324
                        * * *   * *    **      ***** * * **   *   **   *   **  ***

consensus_5073#0      -TAAACAACAATATATTAA--TGACAAA--TAATAACAAAA---------AAGGTGAACT 357
consensus_5073#1      CTAAACAACAATATACTTAACTGACNNAANTAATAACAACACAAAGGCTGAAGGTGAGCT 414
consensus_5073#2      GGATGTTACAGACTACTGGA-AAACATAAGGATTTATAGAGCAGAAGAAAATATCGTACA 383
                        *    ***   ** *      **  *   * * * *            *    *  * 

consensus_5073#0      AAGAAAA---TTTCCAAACAGCTAGCTATTAACAT-TGTA--TGCAGTGCAAACAAGACA 411
consensus_5073#1      AAGCAACAACTTTCCAAACAGCTAGCTATTAACAT-TGCTACTGCAGC-TGCACAACACA 472
consensus_5073#2      TGCGAATGTATCTCTTAA-AGTTAGCTGA-AACATATACTTTTATATT-TGTATTATATT 440
                          **    * **  ** ** *****   ***** *     *  *      *  * *  

consensus_5073#0      ATAATATTCTAACAAAAAACACTAAGGAAAGCATGCACAAATCCATGCAAACATGTTACT 471
consensus_5073#1      NGCACANACTA-CATNTNTCNCCCCCCANC-CACANA-ACACTAAGGCAAACGCACT--- 526
consensus_5073#2      TATTTTCTTTATCAATCGATAGCAGCAGT--CGCCAAAGTATTGAAAAAAATAATTT--- 495
                               ** **                 *    *   *   *   ***     *   

consensus_5073#0      GTTTCATACATTCGCTCTTATACTTGTATGTCAAGCCCCAAAAACCTCTGTATGCTGCTT 531
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      ATTCGTAAAGCTCTCAATTAAAACAAATGGGTTGAAGGTAAACAATTTCATATATCAGCA 591
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      TAAACGGTGANTTTAAAGTATTCGATACAAATAAAAGTAAACAACGGACCTTTCTCTAAG 651
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      CTAACCCAGCAATGTTTAACATTGGTTTGTCAACAAGATATTCAAAAGAAGGTGTTGATT 711
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      GTGTTAGAAACAAGTGAAGAACATAACGCGCTTTGAAGGCTAACAAATGATTAACAAGGG 771
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      CTGAACAGTTATCTGAAGACATGAACAATATATTATCACCACAAATATTCTTATACATAT 831
consensus_5073#1      ------------------------------------------------------------
consensus_5073#2      ------------------------------------------------------------
                                                                                  

consensus_5073#0      ATACACATTATATACATAAAGTCAAATCAAAATCGAATATATTTAT 877
consensus_5073#1      ----------------------------------------------
consensus_5073#2      ----------------------------------------------
                                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)