These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence [GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATGCGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGACTACATGTACATACTGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGGCTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATGGTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGATGCACTACGTGTACAATCCGCTGCACGCCGCGAGCTAC--G-CAGCGTTCTCGCCGATAGCG-TGGTGTCTCTCTTTTGCCTGGACCGTCTTCACCGGCCACCTGGGCTATCGAAACTGGGTGATAGACCTTTNGCCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCTATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAACGCGGTCGCCACAGTATTTCGAGTTCTGGCCAGCCGTTATCTTCAACACTAACGAGTACCTGGTCGTGTTTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATCAACGTGAAGAAGCTACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAAGCGCCACTGAACCATTGGCAGCGCATCCTGCAAAACTTGACGCAGCACCGGGTAGTAGTGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGGTATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACACNAAGACAGCATGTTGC] [+] EMBL BX468185 [GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATGCGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGACTACATGTACATACTGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGGCTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATGGTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGATGCACTACGTGTACAATCCGCTGCACGCCGCGAGCTAC G CAGCGTTCTCGCCGATAGCG TGGTGTCTCTCTTTTGCCTGGACCGTCTTCACCGGCCACCTGGGCTATCGAAACTGGGTGATAGACCTTTNGC ] [-] EMBL BX466763 [ CGCGAGCTACCGGCCAGCGTTCTCGCCGATAGCGCTGGTGTCTCTTTTTTGCCTGGACCGTCTTCACCGCCCACCTGGGCTATCGAAACTGGGTGATAGACTTTTTCTCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCTATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAACGCGGTCGCCACAGTATTTCGAGTTCTGGCCAGCCGTTATCTTCAACACTAACGAGTACCTGGTCGTGTTTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATCAACGTGAAGAAGCTACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAAGCGCCACTGAACCATTGGCAGCGCATCCTGCAAAACTTGACGCAGCACCGGGTAGTAGTGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGGTATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACACNAAGACAGCATGTTGC] consensusID : consensus_5074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 902 fasta sequence [GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTCGTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGATCAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCTGAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGCGCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCTGCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACACGTGATTTGGCCGGGCGGCAGCCAATTTCAACCGGATCCGGTTCAATCAATGTTCACGGGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTGAGAAAAGGCAAGGGGTTCGGTGCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTTTATCTGACCCTTTTGCTGCGTTTTGGCA] [+] EMBL BX467755 [GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTCGTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGATCAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCTGAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGCGCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCTGCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACACGTGATTTGGCCGGGCGGCAGCCAATTTCAACCGGATCCGGTTCAATCAATGTTCACGGGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTGAGAAAAGGCAAGGGGTTCGGTGCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTTTATCTGACCCTTTTGCTGCGTTTTGGCA] consensusID : consensus_5074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [GTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAACCGTGGACCGTGATCGGCCGGGCGGCAGCCATCTTCACCGATCCGTTCATCATGTTCAGCGGCTTCCTGACCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGCTGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTCTGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGACGAACCACGGCGACATCTGCAAGCAGTACTGGTGGCGCAACATGCTGTTCATACACAACTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCCGCGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCACCTACAG] [+] EMBL BX628048 [GTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAACCGTGGACCGTGATCGGCCGGGCGGCAGCCATCTTCACCGATCCGTTCATCATGTTCAGCGGCTTCCTGACCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGCTGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTCTGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGACGAACCACGGCGACATCTGCAAGCAGTACTGGTGGCGCAACATGCTGTTCATACACAACTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCCGCGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCACCTACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5074#1 GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTC 60 consensus_5074#2 ------------------------------------------------------------ consensus_5074#0 ------------------------------------------------------------ consensus_5074#1 GTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGAT 120 consensus_5074#2 ------------------------------------------------------------ consensus_5074#0 ------------------------------------------------------------ consensus_5074#1 CAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCT 180 consensus_5074#2 ------------------------------------------------------------ consensus_5074#0 ------------------------------------------------------------ consensus_5074#1 GAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGC 240 consensus_5074#2 ------------------------------------------------------------ consensus_5074#0 -----------GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTG 49 consensus_5074#1 GCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCT 300 consensus_5074#2 ------------------------------------------------------------ consensus_5074#0 TTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATG 109 consensus_5074#1 GCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTG 360 consensus_5074#2 ---------------------------------------------------------GTG 3 consensus_5074#0 GGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATG 169 ** consensus_5074#1 CCA--GACCAAGCACTACATCT--GGCACGA--GTACTTCACCGATCGGACGCTGCTGGT 414 consensus_5074#2 CCA--GACCAAGCACTACATCT--GGCACGA--GTACTTCACCGATCGGACGCTGCTGGT 57 consensus_5074#0 CGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGAC 229 * * **** ** * ** ****** ** ** * * ** **** * consensus_5074#1 GTGGTGCGCGTTTGCGCTGTAC-GCGCTGCTGGTGCTGTCCTC--------CACCCTGTA 465 consensus_5074#2 GTGGTGCGCGTTTGCGCTGTAC-GCGCTGCTGGTGCTGTCCTC--------CACCCTGTA 108 consensus_5074#0 TACATGTACATAC-TGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGG 288 ** * * ** **** * ** * **** * ** consensus_5074#1 CGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCA--AAAAC 523 consensus_5074#2 CGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCA--AAAAC 166 consensus_5074#0 CTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATG 348 * ** * * * ** **** ** **** * * * * * * * consensus_5074#1 ACCCGTTCG-ATACTGAGCTTCAAGGAGGAG-----CGGAACGATATCGCTTGCCTGCAC 577 consensus_5074#2 ACCCGTTCG-ATACTGAGCTTCAAGGAGGAG-----CGGAACGATATCGCTTGCCTGCAC 220 consensus_5074#0 GTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGAT 408 * * * * **** * * * ** * **** ** ** * * ** * consensus_5074#1 GGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTT 637 consensus_5074#2 GGTATACGCTTCCTGAATGCGATGCT-GCTGCTGATTGCGCACAAATCCATGGCCCTGTT 279 consensus_5074#0 GCACTACGTGTAC--AATCCGCTGCACGCCGCGAGCTACGCA-GCGTTCTCGCCGATAGC 465 * **** * * *** ** *** ** ** * **** * * * * * consensus_5074#1 CTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACA 697 consensus_5074#2 CTTCAACCCGT-ACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAA-CCGTGGAC- 336 consensus_5074#0 GTGGTGTCTCT-CTTTTGCCTGGACCGTCTTCACCG-GCCACCTGGGCTA-TCGAAACTG 522 * * * * **** * * * * * * * * * ** consensus_5074#1 CGTGATTTGGCCGGGCGGCA-GCCAATTTCAACCGGATCCGGTTCAATCAAT-GTTCACG 755 consensus_5074#2 CGTGATC-GGCCGGGCGGCA-GCCATCTTCACC--GATCCG-TTCATC--AT-GTTCAGC 388 consensus_5074#0 GGTGATA-GACCTTTNGCCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCT 581 ***** * ** * * * * * *** ** ** ** * consensus_5074#1 GGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTG-AGAAAAGGCAAGGGGTTCGGT 814 consensus_5074#2 GGCTTCCTGA--CCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGC 446 consensus_5074#0 ATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAAC--GCGGTCGCCAC 639 * ***** * * * * * * * ** * consensus_5074#1 GCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTT 874 consensus_5074#2 TGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTC 506 consensus_5074#0 AGTATTTCGAGTTC--TGGCCAGCCGTTATCTTCAACACTAACGAGTA-CCTGGTCGTGT 696 *** *** * * * * * * ** * ** * consensus_5074#1 T-ATCTG-ACCCTTTTGCTGCGTTTTGGCA------------------------------ 902 consensus_5074#2 TGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGA 566 consensus_5074#0 TTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATC-AACGTGAAGAAGC 755 * *** ** * ***** * consensus_5074#1 ------------------------------------------------------------ consensus_5074#2 CGAACCACGGCGACATCTG-CAAGCAGTACTGGTGGCGCAACATGCTGTTCATA-CACAA 624 consensus_5074#0 TACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAA 815 consensus_5074#1 ------------------------------------------------------------ consensus_5074#2 CTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGA 684 consensus_5074#0 GCGCCACTGAACCATTGGCA-GCGCATCCTGCAAA-ACTTGACG-CAGCACCGGGTAGTA 872 consensus_5074#1 ------------------------------------------------------------ consensus_5074#2 GCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCC-----G 739 consensus_5074#0 G-TGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGG 931 consensus_5074#1 ------------------------------------------------------------ consensus_5074#2 CGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCA 799 consensus_5074#0 TATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACA 991 consensus_5074#1 ----------------- consensus_5074#2 CCTACAG---------- 806 consensus_5074#0 CNAAGACAGCATGTTGC 1008 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||