These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTGATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTGGTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATCTCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGTGCACTGGCTGAAACGCTGGACGACTTCATTGCCACTGGAATGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACATGTGCTGGCCTGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTTGTTCTGATCAACCGAACTGCACCACCTGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCTGTCCTGCTGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGGATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCTAACCTTAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACACCAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCACTATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTACAGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCGACCTTGGCAGAAAAANNCCCCTT] [+] EMBL AL931442 [ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTGATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTGGTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATCTCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGTGCACTGGCTGAAACGCTGGACGACTTCATTGCCACTGGAATGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACATGTGCTGGCCTGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTTGTTCTGATCAACCGAACTGCACCACCTGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCTGTCCTGCTGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGGATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCTAACCTTAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACACCAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCACTATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTACAGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCGACCTTGGCAGAAAAANNCCCCTT] consensusID : consensus_5076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACTACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGGTTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTACGCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGTACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTATCGCGACGCGGTGCNCGGCTGAACACGCTTGGACGANTTCATTTGCGCACCGNGAAAGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACTAGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNGTGAACCTCGTCATTCCGCCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCTTNTGGCCTGGGTGCACAACCTGGTGGTTACGCGACATTCCCNAAAACNCGGCAANAANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGCCAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCTGTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA] [+] EMBL AL695907 [GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACTACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGGTTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTACGCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGTACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTATCGCGACGCGGTGCNCGGCTGAACACGCTTGGACGANTTCATTTGCGCACCGNGAAAGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACTAGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNGTGAACCTCGTCATTCCGCCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCTTNTGGCCTGGGTGCACAACCTGGTGGTTACGCGACATTCCCNAAAACNCGGCAANAANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGCCAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCTGTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA] consensusID : consensus_5076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CGGTATCCCGAGGCGTTCACGGCTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTGTTCGATCAACCGAACGCACCACCCGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCCTGCGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGCAAGCACGTTGGCTATACTGCAGATGAAGGCATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGTACTTATTCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCNCAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA] [+] EMBL AL692183 [CGGTATCCCGAGGCGTTCACGGCTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTGTTCGATCAACCGAACGCACCACCCGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCCTGCGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGCAAGCACGTTGGCTATACTGCAGATGAAGGCATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGTACTTATTCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCNCAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA] consensusID : consensus_5076#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATCCCGAGGCGTTCACGGTTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCTGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAACTAGTTCGATACAAACGAACGCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGGAGAACGCTGTACGTTGGCACTGGAAAGCGTGCCCGGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCTGCGCACCGNAGGAACTGTCCCAGAGCTGCTATGATTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGCGATAACAAGTAAAATGGTTAATCGGTGATGTATATCCTAAAAACAACAACACACAAACAAAT] [+] EMBL AL713810 [AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATCCCGAGGCGTTCACGGTTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCTGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAACTAGTTCGATACAAACGAACGCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGGAGAACGCTGTACGTTGGCACTGGAAAGCGTGCCCGGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCTGCGCACCGNAGGAACTGTCCCAGAGCTGCTATGATTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGCGATAACAAGTAAAATGGTTAATCGGTGATGTATATCCTAAAAACAACAACACACAAACAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5076#2 ------------------------------------------------------------ consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTG 60 consensus_5076#1 ------------------------------------------------------------ consensus_5076#2 ------------------------------------------------------------ consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 ATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTG 120 consensus_5076#1 ------------------GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACT 42 consensus_5076#2 ------------------------------------------------------------ consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 GTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATC 180 consensus_5076#1 ACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGG 102 consensus_5076#2 ---------------------------------------CG-GTATC--CCGAGG--CGT 16 consensus_5076#3 ------------AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATC--CCGAGG--CGT 44 consensus_5076#0 TCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGT 240 consensus_5076#1 TTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTAC 162 * * * consensus_5076#2 TCAC-G---GCTGA-AACGCTGGACGACTTCATTGCCACGGAA--GCATC-----GCCTT 64 consensus_5076#3 TCAC-G---GTTGA-AACGCTGGACGACTTCATTGCCACGGAA--GCATCT----GCCTT 93 consensus_5076#0 GCACTG---GCTGA-AACGCTGGACGACTTCATTGCCACTGGAATGCATC-----GCCTT 291 consensus_5076#1 GCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGT 222 *** * * ** * * ***** ** * * * * * ** * consensus_5076#2 ACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTG---AAATCAACCAGCACGGACA 121 consensus_5076#3 ACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTG---AAATCAACCAGCACGGACA 150 consensus_5076#0 ACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACA 351 consensus_5076#1 ACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTA 282 ** * ** * ** * * * * ** * ** *** * consensus_5076#2 -GTGCGG--CCGTACT-GTATC-GCAATGCACT-GCTCTGGCGGCTGTACCTG-CGGGAA 174 consensus_5076#3 -GTGCGG--CCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAA 207 consensus_5076#0 TGTGCTGGCCTGTACT-GTATC-GCAATGCACT-GCTCTGGCGGCTGTACCTG-CGGGAA 407 consensus_5076#1 -TCGCGACGCGGTGCNCGGCTG---AACACGCTTGGACGANTTCATTTGCGCACCGNGAA 338 ** * ** * * * ** * ** * * * * * ** *** consensus_5076#2 CT-GTTCGAT-CAACCGAAC-GCAC-CACCCGGATACAGTGTGCTGGAGC--AGTGCCGG 228 consensus_5076#3 CTAGTTCGATACAAACGAAC-GCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGG 266 consensus_5076#0 CTTGTTCTGATCAACCGAACTGCAC-CACCTGGATACAGTGTGCTGGAGC--AGTGCCGG 464 consensus_5076#1 AGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACT 398 * * * * * * ** ** * * * * ** consensus_5076#2 AGAACGCTGTACGT-GGCACTGGAA--------GCGTGCCCG-TGGAATAAGGCGCTCTA 278 consensus_5076#3 AGAACGCTGTACGTTGGCACTGGAAA-------GCGTGCCCGGTGGAATAAGGCGCTCTA 319 consensus_5076#0 AGAACGCTGTACGT-GGCACTGGAA--------GCGTGCCCG-TGGAATAAGGCGCTCTA 514 consensus_5076#1 AGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNG-TGAACCTCGTCATTCCG 457 **** * * * ** * *** ** * ** * * * ** consensus_5076#2 CCTCGATGGGGC-------GTCCTGC-GCACCGCAGGAAC-TGTCCCAG--CTGCT-TGA 326 consensus_5076#3 CCTCGATGGGGC-------GTC-TGC-GCACCGNAGGAAC-TGTCCCAGAGCTGCTATGA 369 consensus_5076#0 CCTCGATGGGGCT------GTCCTGCTGCACCGCAGGAAC-TGTCCCAG--CTGCT-TGA 564 consensus_5076#1 CCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCT 517 ** * *** ** * * * * ** ** * * * * consensus_5076#2 TTTGA--TGATGG-AAAAGCAGCT-CCG-GGTGCACGCGATCCCGGCAAGCAC---GTTG 378 consensus_5076#3 TTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGA------GTTG 423 consensus_5076#0 TTTGA--TGATGG-AAAAGCAGCT-CCG-GGTGCACGCGATCCCGGAAGA------GTTG 613 consensus_5076#1 TNTGGCCTGGGTGCACAACCTGGT---G-GTTACGCGACATTCCCNAAAACNCGGCAANA 573 * * ** * * ** * * * * * * * ** ** ** * consensus_5076#2 GCTATACTGCAGATGAAGGC--ATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGT 436 consensus_5076#3 GCTATACTGCG--TGAAGCG--ATAACAAGTAAAATG-GTTAA---TCGGTGATGTATAT 475 consensus_5076#0 GCTATACTGCG--TGAAGG---ATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCT 668 consensus_5076#1 ANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGC 633 * ** * ** * **** * * consensus_5076#2 ACTTAT-TCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCN 495 consensus_5076#3 --------CCTAAAAACAACAACACACAAACAAAT------------------------- 502 consensus_5076#0 AACC-T-TAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACAC 726 consensus_5076#1 CAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCT 693 ** * ** consensus_5076#2 CAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA-------------------- 535 consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 CAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCAC 786 consensus_5076#1 GTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA--------------------- 732 consensus_5076#2 ------------------------------------------------------------ consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 TATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTAC 846 consensus_5076#1 ------------------------------------------------------------ consensus_5076#2 ------------------------------------------------------------ consensus_5076#3 ------------------------------------------------------------ consensus_5076#0 AGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCG 906 consensus_5076#1 ------------------------------------------------------------ consensus_5076#2 ----------------------- consensus_5076#3 ----------------------- consensus_5076#0 ACCTTGGCAGAAAAANNCCCCTT 929 consensus_5076#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||