These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1099 fasta sequence [CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATGCTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTTGTACAAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCGGTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAAATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGGAAGATAGAGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGAGAAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAGAAGAGAGAGAGAGAGAAAGAGAGAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGT-GGGTGGTGATGTTGCACCGTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGTGAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAACCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTTCGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCTGTGGCCAGCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGCACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTTTGTGATCTTCTAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACATATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCACTGCTCA] [+] EMBL BX608978 [CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATGCTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTTGTACAAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCGGTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAAATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGGAAGATAGAGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGAGAAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAGAAGAGAGAGAGAGAGAAAGAGAGAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGT GGGTGGTGATGTTGCACCGTT ] [+] EMBL BM628124 [ AGATACTAAAGAGAAGTAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGTGGGGTGGTGATGTTGCACCGTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGTGAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAACCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTTCGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCTGTGGCCAGCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGCACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTTTGTGATCTTCTAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACATATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCACTGCTCA] consensusID : consensus_5084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1051 fasta sequence [NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATAGCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAGGAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCAGCACAGAAAACAGCATACTCAAAGCAGGAAATAGAAAAGATACAGAAAAAAACCGAGAAGCAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGGAGGAATCCCCGTGGGTGGTGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTTCAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAGNAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAAGCGTTTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGCCTTAATAAAATCATTACCCCCNCTTACACCANACNGNTCNGCTATTCCAGGCATCTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAAACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAGGAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAANCACCCCCAGACGACAAAAGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAAGCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAGAGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAAGGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC] [+] EMBL AL696509 [NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATAGCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAGGAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCAGCACAGAAAACAGCATACTCAAAGCAGGAAATAGAAAAGATACAGAAAAAAACCGAGAAGCAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGGAGGAATCCCCGTGGGTGGTGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTTCAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAGNAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAAGCGTTTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGCCTTAATAAAATCATTACCCCCNCTTACACCANACNGNTCNGCTATTCCAGGCATCTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAAACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAGGAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAANCACCCCCAGACGACAAAAGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAAGCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAGAGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAAGGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC] consensusID : consensus_5084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence [GGCAGAATAGCCCCGAGGTTATCAAAGTTCCGAGTGAATGTTGCGGCTTTCAAACGGACCTATTTTTATCCATTTCGAGTTGTATCCGCTTGCATCGCGCTATATGCTACACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAAAAAGGTTAGCCTGTGGCAGTGGATTGCATACCTTACGGGCGATTTAGGTCATATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGCTCANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTACGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACACCGTNCTTAACTTTCTACNCGTGGTCTTCACGGACCATTCTAGNCACCAACTCTCCACTTTGANTAACACCACAACCGTACTGCACAGCAACCANTNGGCNCCCTCCCCGGTGNAAACTGGCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACATCTCCGCGTGTTGCACGATAGAGGTTGCGCTGTCGAACCGCTAGTCAGNGGCCTCGTAATAACAAGGATTGCATAAAACNCCCTTTCNTTCNAGANCCACTTATTCAAAAGAAANGACGANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCACACGGCNTNTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCAAGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCACGGTCTCNNTTGGANACCTCGGCAGCAAAACACCCCCNNGGCGG] [+] EMBL AL692423 [GGCAGAATAGCCCCGAGGTTATCAAAGTTCCGAGTGAATGTTGCGGCTTTCAAACGGACCTATTTTTATCCATTTCGAGTTGTATCCGCTTGCATCGCGCTATATGCTACACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAAAAAGGTTAGCCTGTGGCAGTGGATTGCATACCTTACGGGCGATTTAGGTCATATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGCTCANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTACGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACACCGTNCTTAACTTTCTACNCGTGGTCTTCACGGACCATTCTAGNCACCAACTCTCCACTTTGANTAACACCACAACCGTACTGCACAGCAACCANTNGGCNCCCTCCCCGGTGNAAACTGGCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACATCTCCGCGTGTTGCACGATAGAGGTTGCGCTGTCGAACCGCTAGTCAGNGGCCTCGTAATAACAAGGATTGCATAAAACNCCCTTTCNTTCNAGANCCACTTATTCAAAAGAAANGACGANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCACACGGCNTNTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCAAGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCACGGTCTCNNTTGGANACCTCGGCAGCAAAACACCCCCNNGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5084#0 ------------------CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATG 42 consensus_5084#2 ------------------------------------------------------------ consensus_5084#1 NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATA 60 consensus_5084#0 CTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTT 102 consensus_5084#2 ------------------------------------GGCAGAATAG-CCCCGAGGTTATC 23 consensus_5084#1 CCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATA 120 * * **** * consensus_5084#0 ---GTAC-------AAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGT 152 consensus_5084#2 AAAGTTC-------CGAGTGAATGTTG-CGGCTTTCAAACGGACCTATTTTTATCCATTT 75 consensus_5084#1 GCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAG-- 178 ** * * * consensus_5084#0 GTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCG 212 consensus_5084#2 CGAGTTGTATCCGCTTGC-----ATCGC--GCTATATGCTACACAGGAATACAAAACTCA 128 consensus_5084#1 GAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCA 238 * * * * * ** * * * consensus_5084#0 GTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAA 272 consensus_5084#2 AAACAAAACTGCC-CTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAA 187 consensus_5084#1 GCACAGAAAACAGCATACTCAAAGCAGG-AAATAGAAAAGATACAGAAAAAAACCGAGAA 297 * * * * * * ** consensus_5084#0 ATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGG 332 consensus_5084#2 A--AAGGTTAGCC-----TGTGGCAGTG-GATTGCATACCTTACGGGCG-ATTTAGGTCA 238 consensus_5084#1 G---CAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGG-AGGAATCCCCGTGGGTGG 353 *** * * * * * * * * consensus_5084#0 AAGATAG---AGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGA----G 385 consensus_5084#2 TATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGC----T 294 consensus_5084#1 TGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTT 413 * * * * * * ** consensus_5084#0 AAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAG----AAGAGAGAGAGAGAGAAAGAGA 441 consensus_5084#2 CANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTA 354 consensus_5084#1 CAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAG 473 * * * ** * consensus_5084#0 GAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTA-AC 500 consensus_5084#2 CGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACAC 414 consensus_5084#1 NAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAA-GCGT 532 * * ** * * * consensus_5084#0 TCCCCACAAACGGGTACACT--GTTTG--GGAGGAATCCCGTGGGTGGTGATGTTGCACC 556 consensus_5084#2 CGTNCTTAACTTTCTACNCGTGGTCTT--CACGGACCATTCTAGNCACCAACTCTCCACT 472 consensus_5084#1 TTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGC 592 * * * * * * ** * * consensus_5084#0 GTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGT 616 consensus_5084#2 TTGANTAACACCACAACCGTAC----TGCACAGCAACCANTNGGCNCCCTCCC-CGGTGN 527 consensus_5084#1 CTTAATAAAATCATTACCCCCN----CTTACACCANACNGNTCNGCTATTCCA--GGCAT 646 * * * * * * * ** * consensus_5084#0 GAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAA 676 consensus_5084#2 AAACTG-----GCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACA 582 consensus_5084#1 CTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAA 706 * ** * * * * * * consensus_5084#0 CCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTT 736 consensus_5084#2 TCTCCGCGTGTTGCACGATAGAGGTTGCG-CTGTCGAACCGCTAGTCAGNGGCCTCGTAA 641 consensus_5084#1 ACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAG 766 * * * * ** consensus_5084#0 CGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACT 796 consensus_5084#2 TAACAAGGATTGCATAAAACNCCCTTTCNTTCN-AGANCCACTTATTCAAAAGAAANGAC 700 consensus_5084#1 GAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAAN 826 * * * consensus_5084#0 GCCCTGTTGGAAGCAAACA-AGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCT 855 consensus_5084#2 GANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCAC 760 consensus_5084#1 CACCCCCAGACGACAAA---AGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAA 883 * * * * * * consensus_5084#0 GTGGCCA-GCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGC 914 consensus_5084#2 ACGGCNT-NTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCA 819 consensus_5084#1 GCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAG 943 * * * * * consensus_5084#0 ACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTT 974 consensus_5084#2 AGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCAC-GGTCTCNNT 878 consensus_5084#1 AGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAA 1003 * * ** * * consensus_5084#0 TGTGATCTTC--TAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACAT 1032 consensus_5084#2 TGGANACCTCGGCAGCAAAACACCCCCNNGGCGG-------------------------- 912 consensus_5084#1 GGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC------------ 1051 * ** ** * consensus_5084#0 ATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCA 1092 consensus_5084#2 ------------------------------------------------------------ consensus_5084#1 ------------------------------------------------------------ consensus_5084#0 CTGCTCA 1099 consensus_5084#2 ------- consensus_5084#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||