cluster # 5085

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Anopheles gambiae
cluster # 5085 cluster # 5085 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5085#0 length = 658 sequences # 1

consensus_5085#1 length = 597 sequences # 1
consensus_5085#2 length = 473 sequences # 2

consensusID : consensus_5085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGTAACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTGTGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTGAGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCGACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGTATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGGAGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCGTTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCGACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATTGCTGTGC]

[+] EMBL BX626554             [TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGTAACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTGTGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTGAGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCGACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGTATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGGAGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCGTTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCGACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATTGCTGTGC]




>consensus_5085#0
TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGTAACCG
CATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTGTGTGT
CCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTGAGGTA
GCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCGACCTGA
TCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGTATGCCTG
CAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGGAGGTACA
GCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTCCAACGCACGTGATTGTGCTGAAAG
ACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGTACCAAT
CGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCGTTGCACTCG
GCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCGACAACCTTC
CTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATTGCTGTGC

consensusID : consensus_5085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [AGAATCCCNCGAGGTTAACTGTTGCGACGTATCTGGCTGGAAGTGTTTCGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCTTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAATGGATGTGTTCTCGCAGGATACGAACGGTGGACTCACTAGTCATCGACGCATGCAAACATGTGGACAATGTCGGCGTGACGCTGTTCTCGTACGGATTCATCGATTCCGACATGGTGCAGGAGGAAACGCCCCACTTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT]

[+] EMBL AL692429             [AGAATCCCNCGAGGTTAACTGTTGCGACGTATCTGGCTGGAAGTGTTTCGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCTTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAATGGATGTGTTCTCGCAGGATACGAACGGTGGACTCACTAGTCATCGACGCATGCAAACATGTGGACAATGTCGGCGTGACGCTGTTCTCGTACGGATTCATCGATTCCGACATGGTGCAGGAGGAAACGCCCCACTTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT]




>consensus_5085#1
AGAATCCCNCGAGGTTAACTGTTGCGACGTATCTGGCTGGAAGTGTTTCGATNCTACTAC
CAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTG
GTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTG
GAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGTAACGGCGATCGAGGAAAGG
AAGCTGCTCGCTTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAG
AACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAATGGATGTGTTC
TCGCAGGATACGAACGGTGGACTCACTAGTCATCGACGCATGCAAACATGTGGACAATGT
CGGCGTGACGCTGTTCTCGTACGGATTCATCGATTCCGACATGGTGCAGGAGGAAACGCC
CCACTTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTGCTGA
AAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT

consensusID : consensus_5085#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [GATCGCCCGAGGTCTGCTGCAGCTGTA-CAAAG-TCG-CATCGAACTGTTGCGA-CGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCC--GGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACG-AAGGT-GGATTCACTAGTCATCGACGACTGCANCACATGTGGNACCACACTGTTGGCCGTGACGCCTTTCTCGTACGG]

[+] EMBL AL930083             [GATCGCCCGAGGTCTGCTGCAGCTGTA CAAAG TCG CATCGAACTGTTGCGA CGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCC  GGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACG AAGGT GGATTCACTAGTCATCGACGACTGCANCACATGTGGNACCACACTGTTGGCCGTGACGCCT           ]
[+] EMBL BX619530             [                 gcaAGCTGTACCAAAGTTCGCCATCGAACTGTTGCGACCGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAA TGGATGTGTTCTCGCAGGATACGAAANGTGGGATTCACTAGTCATCGACGA TG A  AAATGTGGAACCA   TGTTGGGCGTGACNCTGTTCTCGTACGG]




>consensus_5085#2
GATCGCCCGAGGTCTGCTGCAGCTGTACAAAGTCGCATCGAACTGTTGCGACGTATCTGG
TGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACC
TGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCG
AGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCC
GGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCG
TTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGC
TGAACGACATAACTGGATGTGTTCTCGCAGGATACGAAGGTGGATTCACTAGTCATCGAC
GACTGCANCACATGTGGNACCACACTGTTGGCCGTGACGCCTTTCTCGTACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5085#1      ------------------AGAATCCCNCGAGGTT------AACTGTTGCGACGTATCTGG 36
consensus_5085#2      GATCGCCCGAGGTCTGCTGCAGCTGTACAAAGTCGCATCGAACTGTTGCGACGTATCTGG 60
consensus_5085#0      -----TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGT 55
                                                 *              * * ** *  * *   * 

consensus_5085#1      C----TGGAAGTGTTT-CGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGA 91
consensus_5085#2      -----TGGAAGTGTTT-CGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGA 114
consensus_5085#0      AACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTG 115
                              *****  * * ** * **     *   *  *      *   * ** *     

consensus_5085#1      TTTACCTGCAA-ATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTT---CAGCGTG 147
consensus_5085#2      TTTACCTGCAA-ATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTT---CAGCGTG 170
consensus_5085#0      TGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTG 175
                      * *  * *           * ***     * *   * *** **** * *      * ***

consensus_5085#1      GTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAG 207
consensus_5085#2      GTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAG 230
consensus_5085#0      AGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCG- 234
                        *     *  **  *  ******   * *       * *  *  * *  * * *     

consensus_5085#1      AACATGCGCCGGGTAACGGCGATCGA---GGAAAGGAAGCTGCTCGCTTTGGCCTTGAGC 264
consensus_5085#2      AACATGCGCCGGGTAACGGCGATCGA---GGAAAGGAAGCTGCTCGCGTTGGCCTTGAGC 287
consensus_5085#0      -ACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGT 293
                       ** **  *     *   ** **      * * *    ** * *  *   *  **  ** 

consensus_5085#1      A-GCTTGCTGACCGTTT---CGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAAC 320
consensus_5085#2      A-GCTTGCTGACCGTTT---CGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAAC 343
consensus_5085#0      ATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGG 353
                      * ** *** * * *      *  * * **  *  * *         ** ***    *   

consensus_5085#1      GAACGTTACCGAAGCGCTGAACGACATAA-TGGATGTGTTCTCGCAGGATACGAACGGTG 379
consensus_5085#2      GAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACGAA-GGTG 402
consensus_5085#0      AGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTC-CAACGCACGTG-ATTG 411
                              **             **     ** *  * ***** **    ***     **

consensus_5085#1      GACTCACTAGTCATCGACGCATGCAA-ACATG---TGGA----CAATGTCGGC-GTGA-- 428
consensus_5085#2      GATTCACTAGTCATCGACGACTGCANCACATG---TGGNACCACACTGTTGGCCGTGA-- 457
consensus_5085#0      TGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAAC 471
                         * *      *** **     **   * *      *     **   * **    **  

consensus_5085#1      --CGCTGTTCTCGTACGG-ATTCATCGATTCCGACATGGTGCAGGAGG-AAACGCCCCAC 484
consensus_5085#2      --CGCCTTTCTCGTACGG------------------------------------------ 473
consensus_5085#0      AGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCG 531
                          *   ** *  * *                                           

consensus_5085#1      TTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTG-----CTG 539
consensus_5085#2      ------------------------------------------------------------
consensus_5085#0      TTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCG 591
                                                                                  

consensus_5085#1      AAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT-- 597
consensus_5085#2      ------------------------------------------------------------
consensus_5085#0      ACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATT 651
                                                                                  

consensus_5085#1      -------
consensus_5085#2      -------
consensus_5085#0      GCTGTGC 658