These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGTAACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTGTGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTGAGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCGACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGTATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGGAGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCGTTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCGACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATTGCTGTGC] [+] EMBL BX626554 [TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGTAACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTGTGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTGAGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCGACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGTATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGGAGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCGTTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCGACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATTGCTGTGC] consensusID : consensus_5085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [AGAATCCCNCGAGGTTAACTGTTGCGACGTATCTGGCTGGAAGTGTTTCGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCTTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAATGGATGTGTTCTCGCAGGATACGAACGGTGGACTCACTAGTCATCGACGCATGCAAACATGTGGACAATGTCGGCGTGACGCTGTTCTCGTACGGATTCATCGATTCCGACATGGTGCAGGAGGAAACGCCCCACTTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT] [+] EMBL AL692429 [AGAATCCCNCGAGGTTAACTGTTGCGACGTATCTGGCTGGAAGTGTTTCGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCTTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAATGGATGTGTTCTCGCAGGATACGAACGGTGGACTCACTAGTCATCGACGCATGCAAACATGTGGACAATGTCGGCGTGACGCTGTTCTCGTACGGATTCATCGATTCCGACATGGTGCAGGAGGAAACGCCCCACTTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT] consensusID : consensus_5085#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [GATCGCCCGAGGTCTGCTGCAGCTGTA-CAAAG-TCG-CATCGAACTGTTGCGA-CGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCC--GGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACG-AAGGT-GGATTCACTAGTCATCGACGACTGCANCACATGTGGNACCACACTGTTGGCCGTGACGCCTTTCTCGTACGG] [+] EMBL AL930083 [GATCGCCCGAGGTCTGCTGCAGCTGTA CAAAG TCG CATCGAACTGTTGCGA CGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCC GGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACG AAGGT GGATTCACTAGTCATCGACGACTGCANCACATGTGGNACCACACTGTTGGCCGTGACGCCT ] [+] EMBL BX619530 [ gcaAGCTGTACCAAAGTTCGCCATCGAACTGTTGCGACCGTATCTGGTGGAAGTGTTTCGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGATTTACCTGCAAATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTTCAGCGTGGTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAGAACATGCGCCGGGGGTAACGGCGATCGAGGAAAGGAAGCTGCTCGCGTTGGCCTTGAGCAGCTTGCTGACCGTTTCGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAACGAACGTTACCGAAGCGCTGAACGACATAA TGGATGTGTTCTCGCAGGATACGAAANGTGGGATTCACTAGTCATCGACGA TG A AAATGTGGAACCA TGTTGGGCGTGACNCTGTTCTCGTACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5085#1 ------------------AGAATCCCNCGAGGTT------AACTGTTGCGACGTATCTGG 36 consensus_5085#2 GATCGCCCGAGGTCTGCTGCAGCTGTACAAAGTCGCATCGAACTGTTGCGACGTATCTGG 60 consensus_5085#0 -----TACCGTGCGTGCAAAGGTGCTCCGGTAATTAGATTGTCCGGTGTGGGGAAGTGGT 55 * * * ** * * * * consensus_5085#1 C----TGGAAGTGTTT-CGATNCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGA 91 consensus_5085#2 -----TGGAAGTGTTT-CGATCCTACTACCAGCAGACCAACTTCCCGCAAGTGTTACAGA 114 consensus_5085#0 AACCGCATAAGTGGGTGCAATACGACGCGTTGTGCAATAGGGCGACAGCATTGGTGTGTG 115 ***** * * ** * ** * * * * * ** * consensus_5085#1 TTTACCTGCAA-ATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTT---CAGCGTG 147 consensus_5085#2 TTTACCTGCAA-ATAATTTCCCGGGTGCTGGTCAACGATCAGGTAACGTT---CAGCGTG 170 consensus_5085#0 TGTGTCCGTGGTGCCGGAGCACGGAACAAGTTTGGCAATCGGGTATCATCACCTCGGGTG 175 * * * * * *** * * * *** **** * * * *** consensus_5085#1 GTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAG 207 consensus_5085#2 GTGCTCGCCGAGACGGGTGCACAGGACGCGCTGGAAAAAATACTAACCGCCTGGCTGGAG 230 consensus_5085#0 AGGTAGCACCGGATTGCAGCACAGTGTGTGAGCAGCCACACGCCCAACATCAGCCCTCG- 234 * * ** * ****** * * * * * * * * * * consensus_5085#1 AACATGCGCCGGGTAACGGCGATCGA---GGAAAGGAAGCTGCTCGCTTTGGCCTTGAGC 264 consensus_5085#2 AACATGCGCCGGGTAACGGCGATCGA---GGAAAGGAAGCTGCTCGCGTTGGCCTTGAGC 287 consensus_5085#0 -ACCTGATCAAAACAGAAGCAATATGTCTGCAGAATCGGCCGTTTACGAGGCGCTCCAGT 293 ** ** * * ** ** * * * ** * * * * ** ** consensus_5085#1 A-GCTTGCTGACCGTTT---CGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAAC 320 consensus_5085#2 A-GCTTGCTGACCGTTT---CGAACGATGTCATTTACAAGAACTTTGCCGGCATTATAAC 343 consensus_5085#0 ATGCCTGCAGCCAGGACACGCAGATGCTGAAACCTGCCGAGCAAAAGCTGGCCGAGTGGG 353 * ** *** * * * * * * ** * * * ** *** * consensus_5085#1 GAACGTTACCGAAGCGCTGAACGACATAA-TGGATGTGTTCTCGCAGGATACGAACGGTG 379 consensus_5085#2 GAACGTTACCGAAGCGCTGAACGACATAACTGGATGTGTTCTCGCAGGATACGAA-GGTG 402 consensus_5085#0 AGGTACAGCCCGGCTTTCACCTTACGCTGGTGAAAATTTTCTC-CAACGCACGTG-ATTG 411 ** ** ** * * ***** ** *** ** consensus_5085#1 GACTCACTAGTCATCGACGCATGCAA-ACATG---TGGA----CAATGTCGGC-GTGA-- 428 consensus_5085#2 GATTCACTAGTCATCGACGACTGCANCACATG---TGGNACCACACTGTTGGCCGTGA-- 457 consensus_5085#0 TGCTGAAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAAC 471 * * *** ** ** * * * ** * ** ** consensus_5085#1 --CGCTGTTCTCGTACGG-ATTCATCGATTCCGACATGGTGCAGGAGG-AAACGCCCCAC 484 consensus_5085#2 --CGCCTTTCTCGTACGG------------------------------------------ 473 consensus_5085#0 AGTACCAATCGCTGATGACGTCCGTCGATCTCCAGACGCTGAAGGAGCTGAGCAGCTTCG 531 * ** * * * consensus_5085#1 TTTAGCCCGCTGTCGAGCATTTTGCTTGCGCGATCCAACGCACGTGATTGTG-----CTG 539 consensus_5085#2 ------------------------------------------------------------ consensus_5085#0 TTGCACTCGGCATCGATCTACCGACCGGGATTGACGACGGTGCAGCATAGCCTGAACCCG 591 consensus_5085#1 AAAGACTATCTACAGAATCAGCTCGTAGTACTGAAAACCACAATCGGTGCCGAACAGT-- 597 consensus_5085#2 ------------------------------------------------------------ consensus_5085#0 ACAACCTTCCTTNCGACCGACAACCTTCAACTGCAGCTTACCTACCACCCCGGGGACATT 651 consensus_5085#1 ------- consensus_5085#2 ------- consensus_5085#0 GCTGTGC 658 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||