These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 767 fasta sequence [GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGTACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGGGTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAGAAGAACTTTCGTGTTTTTTTATTGT] [+] EMBL BX615998 [GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGTACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTTCACTGAA ] [+] EMBL BX608851 [ AAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGGGTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAGAAGAACTTTCGTGTTTTTTTATTGT] [+] EMBL BX608827 [ AAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTG ] consensusID : consensus_5086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCCCGAGGTTAACACGACTGTCGACGAGTGTCTGATTGATCTGCTGACGCGCATCCGACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACGTCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANTCTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGTCGCCTACTATACTGACACNCGGNGAACGGCACANACCTCTNTGGACCCGCTAGCCCCGCACTCCNCNCA] [+] EMBL AL692431 [CCCCGAGGTTAACACGACTGTCGACGAGTGTCTGATTGATCTGCTGACGCGCATCCGACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACGTCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANTCTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGTCGCCTACTATACTGACACNCGGNGAACGGCACANACCTCTNTGGACCCGCTAGCCCCGCACTCCNCNCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5086#0 -------------------GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGT 41 consensus_5086#1 CCCCGAGGTTAACACGACTGTCGAC-GAGTGTCTGATTGATCTGCTGACGCGCATCCG-- 57 ****** *********** ******************* consensus_5086#0 ACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCG 101 consensus_5086#1 ACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCG 117 ***************************************************** ****** consensus_5086#0 TGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAAC 161 consensus_5086#1 TGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAAC 177 ************************************************************ consensus_5086#0 ATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGC 221 consensus_5086#1 ATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGC 237 ************************************************************ consensus_5086#0 GTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTG 281 consensus_5086#1 GTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTG 297 ************************************************************ consensus_5086#0 ACCAACATCCGC-ATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAA-CATACACG 339 consensus_5086#1 ACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACG 357 ************ ************************************** ******** consensus_5086#0 TCGACCAGCTGATGGACACGATCGGC-TCGCACTGCACCAAGCTGGAGCGGTTGGAGCTT 398 consensus_5086#1 TCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTT 417 ************************** ********************************* consensus_5086#0 CGCTGGGATCCGGAGAATTTGCGCTTCTCCGA-CAAGAGCCAGAAGGCGATCGAT----- 452 consensus_5086#1 CGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANT 477 ******************************* ********* ** ** **** consensus_5086#0 ---TTGCTGCGCGTCAAG-TGCTTG-AAGCT-GCGC-TGTCTGGT-GCTGAGC-GATGGT 503 consensus_5086#1 CTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGT 537 * ************ ****** ***** **** ******** ***** * ****** consensus_5086#0 CGC-TATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCG 562 consensus_5086#1 CGCCTACTATACTGACACNC-GGNGAACGGCACANACCTCTNTGGACCCGCTA-GCCCCG 595 *** ** *** ** *** * * * * ** * *** consensus_5086#0 TACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGT 622 consensus_5086#1 CACTCCNCNCA------------------------------------------------- 606 ** * ** consensus_5086#0 TTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGG 682 consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 GTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAG 742 consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 AAGAACTTTCGTGTTTTTTTATTGT 767 consensus_5086#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||