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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1080 fasta sequence
[TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC]
[+] EMBL BX621847 [TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTG ]
[+] EMBL BX613329 [ CGGTCATGTAGCGACGAGACGTGGGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTATAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTT ]
[+] EMBL BX610258 [ TAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC]
consensusID : consensus_5090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA]
[+] EMBL AL692529 [CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5090#0 TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCA 60
consensus_5090#1 ------------------------------------------------------------
consensus_5090#0 AAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACC 120
consensus_5090#1 ------------------------------------------------------------
consensus_5090#0 AGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACA 180
consensus_5090#1 --------------------------------------------------------CGCG 4
* *
consensus_5090#0 AACAAGTAGATAAGATGGACAAAAACTAAAAC-AGATGAAAAAGACAACAACAAAAAGAG 239
consensus_5090#1 GTTA--CTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGT 62
* * ** ** * * ** * ** * * ** ** *
consensus_5090#0 TATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGT 299
consensus_5090#1 TATGCTT-TCGTGNAACCTTAACTTAATTCAATCGC-CTAGAATGCGTACTTTCGAATGC 120
*** *** *** * * ** ** * * * * * ** *****
consensus_5090#0 ACAAGATAAGACATACTAAACCCAGTGAAAAGGACCC-----GTGCTCTCC-GAAAAGTG 353
consensus_5090#1 GTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACA 180
* ** * * ** * * **** **** ** *** * *****
consensus_5090#0 TGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGT 413
consensus_5090#1 AACGAAACAAAAAGAC--CTTTATTTATACAC---AGGCACATATCCGGCAACGTAANNT 235
* *** ** ** *** **** * * ** ** *** * *
consensus_5090#0 GTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTA 473
consensus_5090#1 AT-TAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAG--TG 292
* ** ** * * * *** * ** * * * ** *
consensus_5090#0 TGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTC 533
consensus_5090#1 AACTGCGTATTGCAN------CCACGTACAATACAACGA-ACCCTCAACCATTACACACC 345
** * *** * * * * ** * * * * * ** * ** *
consensus_5090#0 TT-TTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAAC 592
consensus_5090#1 ACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAAC 405
*** * * * *** * ** * ***
consensus_5090#0 TGATA-CATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGAT 651
consensus_5090#1 ANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTA 465
* * * * * *** * * ** * * *** * ***
consensus_5090#0 TTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCG 711
consensus_5090#1 TTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGG- 524
*** * * * *** * * * * * * * * ** * * *
consensus_5090#0 TCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCC 771
consensus_5090#1 ----CNACATATATAACACGGGAACAGAA-CACACACCAACGCGGACCTTATATCTACCA 579
** * ** * * * *** **** * ** *** ** * * *
consensus_5090#0 TCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAA 831
consensus_5090#1 NCACACANACTTCNAACACTCGGG-----TTACCACCACCTGGCTACNCANCAANNTGN- 633
** * * ** * ** ** * *** *** * *** *
consensus_5090#0 TATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCA 891
consensus_5090#1 TGGTGGANGGGGCCACAG--ACATCAAA--------GGTANCAACGCTTNGGACCNCGNA 683
* * * * * * * ***** *** ** * * * *
consensus_5090#0 CACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACA 951
consensus_5090#1 NTTGGCGGNACAT----TAACANACCANGCACCTCNAGACGCTTACAA-ACA-ACNCAAA 737
* *** * *** ** * * * *** * **** *** ** ** *
consensus_5090#0 TGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAAC 1011
consensus_5090#1 CACCGACCACAA--CANAGACCAACATAACANCTC---AACCACACGGGGTNCANACANC 792
** ** ** *** ** * ** * *** *** * * *
consensus_5090#0 AAA-ACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTA 1070
consensus_5090#1 AGCCAAACTTAA------------------------------------------------ 804
* * * ****
consensus_5090#0 AGTGCGATGC 1080
consensus_5090#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||