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Anopheles gambiae
cluster # 5092 cluster # 5092       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5092#0 length = 1675 sequences # 3  
consensus_5092#1 length = 547 sequences # 1  

consensusID : consensus_5092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1675
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT]

[+] EMBL BM641224             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM648667             [                                                                                                                                                                                                                                                                                                                                                                                                        ccgTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM590972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgCCCTTTTGGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACGCACTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT]


>consensus_5092#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAG AAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCAC TCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGT TGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTT TTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT ATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAA GAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGT TTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATAT TACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAAT TTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACA TTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAAC GTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTT CTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATC ATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAAT CCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACT CGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTAC AGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGC TAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTC GAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACA AGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAA GTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTG CTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGAT GTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCA AGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCA CGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGG TAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTA CAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTAT CTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT



consensusID : consensus_5092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT]

[+] EMBL AL692578             [GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT]


>consensus_5092#1 GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACC ATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGG ATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGC TCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAG CTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGA GCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTAC ACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAG AAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCG TTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGC ATTTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5092#0      CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAG 60
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      AAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCAC 120
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      TCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGT 180
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      TGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTT 240
consensus_5092#1      ------------------GATCCCCCGAGTTAATTTAATTTAAAGTCACATGAT-CTGTT 41
                                         *      **     ** ************ ***** *  **

consensus_5092#0      TTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 300
consensus_5092#1      ACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 101
                         *********************************************************

consensus_5092#0      ATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCA--------CTCCATTCTCTTTCACA 352
consensus_5092#1      ATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACA 161
                      ************  *********************        *****************

consensus_5092#0      CAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATA 412
consensus_5092#1      CAAAAAA-GAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATA 220
                      ******* ***** *************** **************** *************

consensus_5092#0      CAGAATGTTTGATTAATGAGCTTAATATTC----TGGAATATTCCCATTTAATAATTCCT 468
consensus_5092#1      CGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCT 280
                      * ********************* ******    ** *** ************** ****

consensus_5092#0      CGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTT-CGTTTCGGTTT 527
consensus_5092#1      CGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCA---- 336
                      ********** ** **** ********** **  ************ * * ****     

consensus_5092#0      GATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGA 587
consensus_5092#1      -----ATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGC 391
                           *** ************ *********** *** ************* ******* 

consensus_5092#0      ACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCT 647
consensus_5092#1      ACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGT-----------TTCCT 440
                      ******************* **************** * *** *           *****

consensus_5092#0      TCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCA 707
consensus_5092#1      TCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACAC 500
                      ****** **************** ******************** *** *********  

consensus_5092#0      AACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCA 767
consensus_5092#1      AAGAC--TTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT----------- 547
                      ** **  *** *********  **** ****************** ***           

consensus_5092#0      GCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAG 827
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      CCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGC 887
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      AGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCC 947
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      AACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCC 1007
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      TGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATT 1067
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      AACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGG 1127
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      ACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGT 1187
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      CGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACC 1247
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      ATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGC 1307
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      ACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATA 1367
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      GCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGG 1427
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      ACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATG 1487
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      AGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGA 1547
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      GACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAA 1607
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      TGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCAC 1667
consensus_5092#1      ------------------------------------------------------------
                                                                                  

consensus_5092#0      CATTTGTT 1675
consensus_5092#1      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)