These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1675 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT] [+] EMBL BM641224 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGT ] [+] EMBL BM648667 [ ccgTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTC ] [+] EMBL BM590972 [ ccgCCCTTTTGGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACGCACTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT] consensusID : consensus_5092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT] [+] EMBL AL692578 [GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5092#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAG 60 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 AAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCAC 120 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 TCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGT 180 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 TGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTT 240 consensus_5092#1 ------------------GATCCCCCGAGTTAATTTAATTTAAAGTCACATGAT-CTGTT 41 * ** ** ************ ***** * ** consensus_5092#0 TTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 300 consensus_5092#1 ACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 101 ********************************************************* consensus_5092#0 ATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCA--------CTCCATTCTCTTTCACA 352 consensus_5092#1 ATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACA 161 ************ ********************* ***************** consensus_5092#0 CAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATA 412 consensus_5092#1 CAAAAAA-GAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATA 220 ******* ***** *************** **************** ************* consensus_5092#0 CAGAATGTTTGATTAATGAGCTTAATATTC----TGGAATATTCCCATTTAATAATTCCT 468 consensus_5092#1 CGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCT 280 * ********************* ****** ** *** ************** **** consensus_5092#0 CGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTT-CGTTTCGGTTT 527 consensus_5092#1 CGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCA---- 336 ********** ** **** ********** ** ************ * * **** consensus_5092#0 GATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGA 587 consensus_5092#1 -----ATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGC 391 *** ************ *********** *** ************* ******* consensus_5092#0 ACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCT 647 consensus_5092#1 ACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGT-----------TTCCT 440 ******************* **************** * *** * ***** consensus_5092#0 TCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCA 707 consensus_5092#1 TCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACAC 500 ****** **************** ******************** *** ********* consensus_5092#0 AACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCA 767 consensus_5092#1 AAGAC--TTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT----------- 547 ** ** *** ********* **** ****************** *** consensus_5092#0 GCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAG 827 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 CCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGC 887 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 AGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCC 947 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 AACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCC 1007 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 TGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATT 1067 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 AACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGG 1127 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 ACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGT 1187 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 CGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACC 1247 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 ATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGC 1307 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 ACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATA 1367 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 GCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGG 1427 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 ACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATG 1487 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 AGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGA 1547 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 GACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAA 1607 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 TGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCAC 1667 consensus_5092#1 ------------------------------------------------------------ consensus_5092#0 CATTTGTT 1675 consensus_5092#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||