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Anopheles gambiae
cluster # 5101 cluster # 5101       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5101#0 length = 1101 sequences # 2  
consensus_5101#1 length = 664 sequences # 1  
consensus_5101#2 length = 552 sequences # 1  

consensusID : consensus_5101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1101
fasta sequence
                              [CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACACTGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATACACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAGGTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAATTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGAAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGAGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAGACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGGCAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTGGCATCTATCCCACATTAACCGNT]

[+] EMBL BM602981             [CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACACTGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATACACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAGGTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAATTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGAAACATTGC                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AL934701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ggcccgagGGCAA  ACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGAGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAGACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGGCAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTGGCATCTATCCCACATTAACCGNT]


>consensus_5101#0 CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACAC TGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGC CGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTT CTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATA CACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCT CCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGA AAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAG GTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAAT TAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA TATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG TCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACC ATAAAATAACTAGAAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATT ACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGC ACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAG TCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGAG TCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAGAC AAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGGCA AAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTGGC ATCTATCCCACATTAACCGNT



consensusID : consensus_5101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTACATTGGAATGTGTATGGAGTTATACACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTGTTTATGTTTGTTGTACACTTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCAC]

[+] EMBL AL930184             [GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTACATTGGAATGTGTATGGAGTTATACACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTGTTTATGTTTGTTGTACACTTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCAC]


>consensus_5101#1 GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTAGGCGTGCCGATAGCCGATGAAT GGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAAT GTTGCAAGTTACATTGGAATGTGTATGGAGTTATACACATCGGCTCTATATATGTATGTG TGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTA ATACACATAAACTTGGACTGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTC GTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTC GCGTATATGCGTGTTTATGTTTGTTGTACACTTAATTTGTTTGTAAAGCATACGTGCGTG GGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCA CCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACA CTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGA GAGATCGNAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAAC TCAC



consensusID : consensus_5101#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [AGAATCCCCCGAGGTNAATACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTTGTTTATGTTTTGTTGTACACTTAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGA]

[+] EMBL AL692744             [AGAATCCCCCGAGGTNAATACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTTGTTTATGTTTTGTTGTACACTTAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGA]


>consensus_5101#2 AGAATCCCCCGAGGTNAATACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAAT TGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTTGTTTATGT TTTGTTGTACACTTAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACT AACGTCCTGTGCATATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTC GTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAG TAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATC ATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACA GCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAG ACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTT TTAACCACCGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5101#0      CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACAC 60
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      TGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGC 120
consensus_5101#1      --------------GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTA-GGCGTGC 45
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      CGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTT 180
consensus_5101#1      CGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTT 105
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      CTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATA 240
consensus_5101#1      CTTATAGCGCCTAATGTTGCAAGTTA----------CATTGGAATGTGTATGGAGTTATA 155
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      CACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCT 300
consensus_5101#1      CACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCT 215
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      CCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGA 360
consensus_5101#1      CCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGA 275
consensus_5101#2      -------------------------------------------AGAATCCCCCGAG--GT 15
                                                                  *        **   * 

consensus_5101#0      AAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAG 420
consensus_5101#1      AAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAG 335
consensus_5101#2      NAATA-CAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAG 74
                       **** ********************  *********** ********************

consensus_5101#0      GTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAAT 480
consensus_5101#1      GTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGT--GTTTATGTTT-GTTGTACACT 392
consensus_5101#2      GTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTT-GTTTATGTTTTGTTGTACACT 133
                      ******** ******* *  *****************  ********** ******** *

consensus_5101#0      TAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 540
consensus_5101#1      TAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 452
consensus_5101#2      TAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 193
                      *****************  *****************************************

consensus_5101#0      TATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 600
consensus_5101#1      TATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 512
consensus_5101#2      TATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 253
                      ******************  ****************************************

consensus_5101#0      TCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 660
consensus_5101#1      TCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 572
consensus_5101#2      TCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 313
                      ************************ ***********************************

consensus_5101#0      ATAAAATAACTAGAAACATTGCCACCGAGAGAT--GAGTTTAAGAAATCATTACTAAACA 718
consensus_5101#1      ATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACA 632
consensus_5101#2      ATAAAATAACTAGCAACATTGCCACCGAGAGAT--GAGTTTAAGAAATCATTACTAAACA 371
                      ************* *******************   ************************

consensus_5101#0      TTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGT 778
consensus_5101#1      TTACTAAACAACCACATAGGGCACAAACTCAC---------------------------- 664
consensus_5101#2      TTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGT 431
                      ********************************                            

consensus_5101#0      GCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATG 838
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      GCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATG 491
                                                                                  

consensus_5101#0      AGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGG 898
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      AGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGG 551
                                                                                  

consensus_5101#0      AGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAG 958
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      A----------------------------------------------------------- 552
                                                                                  

consensus_5101#0      ACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGG 1018
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      CAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTG 1078
consensus_5101#1      ------------------------------------------------------------
consensus_5101#2      ------------------------------------------------------------
                                                                                  

consensus_5101#0      GCATCTATCCCACATTAACCGNT 1101
consensus_5101#1      -----------------------
consensus_5101#2      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)