These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1539 fasta sequence [TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAGATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGCAGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAACCAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACTTTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCCACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGGGTGAACTGCTGTCGTACGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCGACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTGGCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGATGAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCGACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA] [+] EMBL CNS09PN5 [TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAGATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGCAGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAACCAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACTTTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAG ] [+] EMBL BX606226 [ ATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGCGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCCGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGCGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCCGGACGGTCTGGTGA ] [-] EMBL CNS09PN6 [ AGCGTTCGCGAAGGCCCACACAAATGGCAACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTTAAATACGCGAAAACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCCCGGGACGGTCTGGTGAGCT GGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCCACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGGGTGAACTGCTGTCGTACGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCGACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTGGCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGATGAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCGACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA] consensusID : consensus_5107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCCCGAGGTTNATACGCGAACACATGACGAAGCGATCGNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCGGACGGATCCGCTCAGCCTGACGCTTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCGACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGGGTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG] [+] EMBL AL692969 [CCCCGAGGTTNATACGCGAACACATGACGAAGCGATCGNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCGGACGGATCCGCTCAGCCTGACGCTTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCGACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGGGTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5107#0 TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAG 60 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 ATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGC 120 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 AGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAAC 180 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 CAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACT 240 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 TTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAG 300 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 GGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACA 360 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 AAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACT 420 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 TTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGT 480 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 CCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGT 540 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 TTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTG 600 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 TATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAA 660 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 GTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATC 720 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 TGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAG 780 consensus_5107#1 -------------------------CCCCGAGGTTNA--TACGCGAACACAT-GACGAAG 32 * * ** * ************* ******* consensus_5107#0 CGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGG 840 consensus_5107#1 CGATC-GNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGG 91 ***** * **************************************************** consensus_5107#0 TGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGG-CATCCAGGGGGACAG 899 consensus_5107#1 TGAGCTGGG-ACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAG 150 ********* ********************************** *************** consensus_5107#0 CCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACG 959 consensus_5107#1 CCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACG 210 **************************************************** ******* consensus_5107#0 TGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCT-GGACG 1018 consensus_5107#1 TGACAAAGCGCACTGGATGGAGGCGGCC-GGACGGATCCGCTCAGCCTGACGCTTGGACG 269 **************************** ************************* ***** consensus_5107#0 AGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACG 1078 consensus_5107#1 AGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACG 329 ********************************************** ************* consensus_5107#0 ACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCC 1138 consensus_5107#1 ACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCG 389 ************************************ ********************** consensus_5107#0 ACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCG 1198 consensus_5107#1 ACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCG 449 ******************* **************************************** consensus_5107#0 AGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGG 1258 consensus_5107#1 AGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGG 509 ********************************************** ************* consensus_5107#0 GTGAACTGCTGTCGTAC-GTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCG 1317 consensus_5107#1 GTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG----- 564 **** ************ ************************************* consensus_5107#0 ACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTG 1377 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 GCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGAT 1437 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 GAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCG 1497 consensus_5107#1 ------------------------------------------------------------ consensus_5107#0 ACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA 1539 consensus_5107#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||