These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 659 fasta sequence [CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG] [+] EMBL BM585832 [CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGAATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACTGCCGGTCGCGGTCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTATGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGCTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGTGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCG ] [+] EMBL BX628449 [ gttcagtcACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGANTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGA ] [+] EMBL BM593217 [ ccgGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGGAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG] consensusID : consensus_5112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTCTCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGGCCTCTCGCCGACGCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT] [+] EMBL AL693040 [AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTCTCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGGCCTCTCGCCGACGCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5112#0 CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCA 60 consensus_5112#1 ---------------AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTC--TCCA 43 * * *** ********************** *** consensus_5112#0 GTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCT 120 consensus_5112#1 GTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCT 103 ************************************************************ consensus_5112#0 AGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACC 180 consensus_5112#1 AGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACC 163 ************************************************************ consensus_5112#0 CAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATC 240 consensus_5112#1 CAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATC 223 ************************************************************ consensus_5112#0 GACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGG 300 consensus_5112#1 GACACGGAAGAACCG-GCCTCTCGCCGAC--GCATCCATTTCGATGCCAAAACCGATGGG 280 *************** ************* **************************** consensus_5112#0 CAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAA-GGT 359 consensus_5112#1 CAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGT 340 ******************************************************** *** consensus_5112#0 TTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGG 419 consensus_5112#1 TTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGG 400 ************************************************************ consensus_5112#0 GGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGC 479 consensus_5112#1 GGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGC 460 ************************************************************ consensus_5112#0 CGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGAT 539 consensus_5112#1 CGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT--------------- 505 ********************************************* consensus_5112#0 GGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGA 599 consensus_5112#1 ------------------------------------------------------------ consensus_5112#0 ACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG 659 consensus_5112#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||