These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGCAGACGATCAACTACATTGCCGCCCGCAACCGGGTGGGCGCTGTCGGAGAGGTGATTTCGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGCAACAACATCAACCTGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGCAGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCGATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGGTCTGCTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAGCCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACGCCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGATTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGTCGAACCGTGGACGT] [+] EMBL AL696226 [ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGCAGACGATCAACTACATTGCCGCCCGCAACCGGGTGGGCGCTGTCGGAGAGGTGATTTCGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGCAACAACATCAACCTGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGCAGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCGATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGGTCTGCTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAGCCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACGCCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGATTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGTCGAACCGTGGACGT] consensusID : consensus_5115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [TCGCCCCGAGGTTTAAATGAAAGCAGCTACGGTGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTG-ATTCCCGACGGTAAC-GGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGTCCCCAAGGGTGACAAT-GAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGT-GTTCCG-CTGTACACCCGT-CGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGT-TTCCGGCAGCAACTTCAATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGA-GGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAG-ACGATCAA--TACATTGCCG--CCGC-AACCG-GG-TG-GGCGC-TGTCGGAGAGG-TGATTTCGCGCATG-ATCAACA-CATCGTGTCCGC-TACCGG-TACGT-CGCGCAACAACATCAACCTGA-TCGG-CACAGCT-TGGGCGCGCACGTGGCGGCAACGCCGGTAAG] [+] EMBL AL694301 [TCGCCCCGAGGTTTAAATGAAAGCAGCTACGGTGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTG ATTCCCGACGGTAAC GGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGTCCCCAAGGGTGACAAT GAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGT GTTCCG CTGTACACCCGT CGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGT TTCCGGCAGCAACTTCAATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGA GGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAG ACGATCAA TACATTGCCG CCGC AACCG GG TG GGCGC TGTCGGAGAGG TGATTTCGCGCATG ATCAACA CATCGTGTCCGC TACCGG TACGT CGCGCAACAACATCAACCTGA TCGG CACAGCT TGGGCGCGCACGTGGCGGCAACGCCGGTAAG] [+] EMBL AL693071 [ gaggttAGCAT CACCCGTGGGCCCTGCATTCCCGACGGTAACTGGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGT CCCAAGGGTGACAATAGAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGTAGTTCCGCCTGTACACCCGTACGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGTNTTCCGGCAGCAACTTCAATCCGG CCATCCGACGCGCTTCCTGATCCACGGCTTCCTGCAGNGGCGACGGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAGCACGATCAACTTACATTGCCGCCCCGCAAACCGCGGCTGCGGCGCNTGTCGGAGAGGCTGATTTCGCGCATGCATCAACACCATCGTGTCCGCATACCGGCTACGTCCGCGCAACAACATCAACCTGACTCGGCCACAGCTATGGGCGCGCACGTGGCGGCca ] consensusID : consensus_5115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCAGCTACGGTGATACTAAGCGTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACCGTACGATGTCCCCAAAGGGTGACAATTGAGGTTTGAGCGNTTGTTCGATCCGCTGACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTCGCAAATTCCGGGGTCCATCCGGCAAAGTTGNATCCCGGTTGGGAAAACCGGATTTGCCGGGGGGGTTTTTTCCCCGGGTTT] [+] EMBL AL696567 [TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCAGCTACGGTGATACTAAGCGTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACCGTACGATGTCCCCAAAGGGTGACAATTGAGGTTTGAGCGNTTGTTCGATCCGCTGACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTCGCAAATTCCGGGGTCCATCCGGCAAAGTTGNATCCCGGTTGGGAAAACCGGATTTGCCGGGGGGGTTTTTTCCCCGGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5115#1 --------------------------TCGCCCCGAGGTTTAAATGAAAGCA--GCTACGG 32 consensus_5115#2 ----------TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCA--GCTACGG 48 consensus_5115#0 ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGC 60 * ** * * ** consensus_5115#1 TGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCA 92 consensus_5115#2 TGA-TACTAAGC-GTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCA 106 consensus_5115#0 AGACGATCAACT--ACATTGCCGCCCGCAAC-CGGGTGGGCGCTGTCGGAGAGGTGATTT 117 ** * ** *** ** ** * * ** * **** * ** * ** consensus_5115#1 TCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACC 152 consensus_5115#2 TCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACC 166 consensus_5115#0 CGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGC---AACAACATCAACC 174 * * * * ** ** ** *** * * *** * **** * **** consensus_5115#1 CGTACGATGTCCCCAA-GGGTGACA-AT-GAGGTT-GAGCCGCTGTTC----GATCCGCT 204 consensus_5115#2 -GTACGATGTCCCCAAAGGGTGACA-ATTGAGGTTTGAGCGNTTGTTC----GATCCGCT 220 consensus_5115#0 TGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGC 234 * ** * * ** ** * * ** ** * * ** * * consensus_5115#1 GAC-GGACGTTGTGTTCCGCT---GTACACCCG-TC-GCAA--TCCGG------------ 244 consensus_5115#2 GACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTC-GCAAATTCCGGG----------- 268 consensus_5115#0 AGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCG 294 * * ** * ** * * *** ** ** ** consensus_5115#1 -TCCATCCGCAAGTGATCCGCTGGAAC-GATGCGGGTTCCGTTT-CCGGCAGCAACTTCA 301 consensus_5115#2 GTCCATCCGGCAAAGTTGNATCCCGGT-TGGGAAAACCGGATTTGCCGGGGGGGTTTTTT 327 consensus_5115#0 ATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGG-TCTG 353 ** * ** * * ** * consensus_5115#1 ATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGAGGATGCCAG 361 consensus_5115#2 CCCCGGGTTT-------------------------------------------------- 337 consensus_5115#0 CTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAG 413 ** consensus_5115#1 CCTGCACTGGTCCATCAAG-GATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACG 420 consensus_5115#2 ------------------------------------------------------------ consensus_5115#0 CCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACG 473 consensus_5115#1 TGGACTGGGGCGCGGGTTCGCAGACGATCAATACATTGC-CGCCGCAACCGGGTGGGCGC 479 consensus_5115#2 ------------------------------------------------------------ consensus_5115#0 CCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGA 533 consensus_5115#1 TGTCGGAGAGGTGATTTCGCGCATGATCAACACATCGTGTCCGCTACCGGTACGTCGCGC 539 consensus_5115#2 ------------------------------------------------------------ consensus_5115#0 TTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGT 593 consensus_5115#1 AACAACATCAACCTGATCGGCACAGCTTGGGCGCGCACGTGGCGGCAACGCCGGTAAG 597 consensus_5115#2 ---------------------------------------------------------- consensus_5115#0 CGAACCGTGGACGT-------------------------------------------- 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||