These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [AATCGCCCGAGTTTAAGCTGACGGCTTCAAGTGGATGGTAATAAATCGTGTGGAACTGCTTGCTCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTACCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCCGAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTCCAAGGCAACGCTACGCGAGATGGTGGACTGCATC] [+] EMBL AL693171 [AATCGCCCGAGTTTAAGCTGACGGCTTCAAGTGGATGGTAATAAATCGTGTGGAACTGCTTGCTCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTACCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCCGAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTCCAAGGCAACGCTACGCGAGATGGTGGACTGCATC] consensusID : consensus_5118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAACTTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCGGTGGAACTGCTTGCCCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGACGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC] [+] EMBL BX615466 [ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAACTTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCGGTGGAACTGCTTGCCCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGACGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC] [+] EMBL BX616652 [ GCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGATGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGA ] consensusID : consensus_5118#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 123 fasta sequence [GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGATCTGCAAGCGTATCCGCAACAGGGGCCCGGCCGGCGAAGCGCAACAGGAAGAAAACTACCCCCAGACGGGCGGGGCCGGGCGGGT] [+] EMBL BX615817 [GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGATCTGCAAGCGTATCCGCAACAGGGGCCCGGCCGGCGAAGCGCAACAGGAAGAAAACTACCCCCAGACGGGCGGGGCCGGGCGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5118#1 ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAAC 60 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 ------------------------------------------------AATCGCCCGAGT 12 consensus_5118#1 TTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCG-GTGGAACTGCTTGC 119 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 TTAA-------GCTGAC-GGCTTCAAGTGGATGG-TAATAAATCGTGTGGAACTGCTTGC 63 consensus_5118#1 CCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCAC 179 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 TCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCAC 123 consensus_5118#1 CGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCT 239 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 CGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCT 183 consensus_5118#1 GCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGG 299 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 GCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGG 243 consensus_5118#1 CTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTAT 359 consensus_5118#2 ---------------------GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGAT 39 consensus_5118#0 CTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTAT 303 ********** ************************* ** consensus_5118#1 CTTCAAGCGTATCCGCAACATGGGCCCGGCCGG--CGACGCGCAACAGGATGAAAACTAC 417 consensus_5118#2 CTGCAAGCGTATCCGCAACAGGGGCCCGGCCGG--CGAAGCGCAACAGGAAGAAAACTAC 97 consensus_5118#0 CTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTAC 363 ** ***************** ********** * ** *********** ********* consensus_5118#1 CCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGG 477 consensus_5118#2 CCCCAGACGGGCGGGGCCGGGCGGGT---------------------------------- 123 consensus_5118#0 CCC-AGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGG 422 *** ****** *** ***** *** * consensus_5118#1 TACGATTCTTCCCAACCGG-ATGGCC-GTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGA 535 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 TACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGA 482 consensus_5118#1 TGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC 595 consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 TGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCC 542 consensus_5118#1 ------------------------------------------------------------ consensus_5118#2 ------------------------------------------------------------ consensus_5118#0 GAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTC 602 consensus_5118#1 ---------------------------------- consensus_5118#2 ---------------------------------- consensus_5118#0 CAAGGCAACGCTACGCGAGATGGTGGACTGCATC 636 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||