|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1180 fasta sequence
[CAGGCGCAGAAAAATGAAACAGAATGTGGACAGTTGTTGGCCGACCAACAATGTGCAAACAACGCGGACAGTACGGATGCAACACAAGGGATACAAATATTATCATAAAATCACACACTAGTAATAAAGGCAGCAACTTCCCCCTTCCTCAAACAAACCATTCCATCGAAAGCCACACTTGTTCAGAGCGGGAGAGAGGCAGAAGTGACGAGAGGGAGAGAACGGTACAGTGTTGAGGAAATTCATTCCAACTTGCATAAAGTAGAAATGGAACTGTAATTAAAGCTCGTTTTACTATTCGGCCCCCTTCTGGCAGTTAGGGCGGTTAACAATAGCAATTAATCGCTCTTTTTCGAGCACTATTGCTGTCTCTCTCTCCTTCATAGTCTCTCCCTCTCAATAGGTGTCAATCAGGCGTTATCGCTCGAACAAACATTGCCATTCTGTTGAAATTGTACAACCGAAATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTTTCATTATCATTACTGCGTTCAATCATCAGACGGTGGAAAAGAATACTCATTACAATGCATTACATACTGAAACGAACCCTGTAGAAAAGAGACAGAGTATGTATTCGTGTGTGTGAAGAGCAGGGATGAGATGAAGCTTTTTGTTCTGTTTTTGCTGATAATGAAATCGAAATGCAAACAAACGAAACCGTGCTGGACGTACGCTCCCAAGCTCTTCATTGCATCGAATCGTTGTTAATAAGAAACACTCACACCCGACGCAACACACACACACACACCGAAAGCGGTGAGAGTGCAATCAGTGTTGTTGCTGTTGCGGAAACAATAAAATCCTCAAAAACAATAAACCAAGTGGTGCAAAGTAAAACTCGAATGCAAAAATAAACATACCCATCTTCTTCTCACTCCCGCACCAGACATCCGCACCAGGCAACCTCCCCAGAAGAGTATACAATATACATTGAATAAATGGGTTTACAAAAAGGAACCTACAAAAAATAGGTGCATACAGTGGCAACAGCAAAGAACAGGTTTAGTTGCAAGTTCCCCGGGGCAAACCAGAAAAATAACAGACCAGAAATGGCAACCAGCTGTACAGTACGGGCACGCTCCGGTACTGCGGACATACATTTATGAATAAAATGCAAATTTATTAATGAAAAAAAACGG]
[+] EMBL BX617606 [CAGGCGCAGAAAAATGAAACAGAATGTGGACAGTTGTTGGCCGACCAACAATGTGCAAACAACGCGGACAGTACGGATGCAACACAAGGGATACAAATATTATCATAAAATCACACACTAGTAATAAAGGCAGCAACTTCCCCCTTCCTCAAACAAACCATTCCATCGAAAGCCACACTTGTTCAGAGCGGGAGAGAGGCAGAAGTGACGAGAGGGAGAGAACGGTACAGTGTTGAGGAAATTCATTCCAACTTGCATAAAGTAGAAATGGAACTGTAATTAAAGCTCGTTTTACTATTCGGCCCCCTTCTGGCAGTTAGGGCGGTTAACAATAGCAATTAATCGCTCTTTTTCGAGCACTATTGCTGTCTCTCTCTCCTTCATAGTCTCTCCCTCTCAATAGGTGTCAATCAGGCGTTATCGCTCGAACAAACATTGCCATTCTGTTGAAATTGTACAACCGAAATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTTTCATTATCATTACTGCGTTCAATCATCAGACGGTGGAAAAGAATACTCATTACAATGCATTACATACTGAAACGAACCCTGTAGAAAAGAGACAGAGTATGTATTCGTGTGTGTGAAGAGCAGGGATGAGATGAAGCTTTTTGTTCTGTTTTTGCTGATAATGAAATCGAAATGCAAACAAACGAAACCGTGCTGGACGTACGCTCCCAAGCTCTTCATTGCATCGAATCGTTGTTAATAAGAAc ]
[+] EMBL BX611575 [ TTGCCATTCTGTTGAAATTGTACAACCGAAATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTTTCATTATCATTACTGCGTTCAATCATCAGACGGTGGAAAAGAATACTCATTACAATGCATTACATACTGAAACGAACCCTGTAGAAAAGAGACAGAGTATGTATTCGTGTGTGTGAAGAGCAGGGATGAGATGAAGCTTTTTGTTCTGTTTTTGCTGATAATGAAATCGAAATGCAAACAAACGAAACCGTGCTGGACGTACGCTCCCAAGCTCTTCATTGCATCGAATCGTTGTTAATAAGAAACACTCACACCCGACGCAACACACACACACACACCGAAAGCGGTGAGAGTGCAATCAGTGTTGTTGCTGTTGCGGAAACAATAAAATCCTCAAAAACAATAAACCAAGTGGTGCAAAGTAAAACTCGAATGCAAAAATAAACATACCCATCTTCTTCTCACTCCCGCACCAGACATCCGCACCAGGCAACCTCCCCAGAAGAGTATACAATATA ]
[-] EMBL BM652260 [ TTTCATTATCATTACTGCGTTCAATCATCAGACGGT GAAAAGAATACTCATTACAATGCATTACATACTGAAACGAACCCTGTAGAAAAGAGACAGAGTATGTATGTGTGTGTGTGAAGAGCAGGGATGAGATGAAGCTTTTTGTTCTGTTTTTGCTGATAATGAAATCGAAATGCAAACAAACGAAACCGTGCTGGACGTACGCTCCCAAGCTCTTCATTGCATCGAATCGTTGTTAATAGGAAACACTCACACCCGACGCAACACACACACACACACCGAAAGCGGTGAGAGTGCAATCAGTGTTGTTGCTGTTGCGGAAACAATAAAATCCTCAAAAACAATAAACCAAGTGGCGCAAAGTAAAACTCGAATGCAAAAATAAACATACCCATCTTCTTCTCACTACCGCACCAGACATCCACACCAGACAACCTCCCCAGAAGAGTATACAATATACATTGAATAAATGGGTTTACAAAAAGGAACCTACAAAAAATAGGTGCATACAGTGGCAACAGCAAAGAACAGGTTTAGTTGCAAGTTCCCCGGGGCAAACCAGAAAAATAACAGACCAGAAATGGCAACCAGCTGTACAGTACGGGCACGCTCCGGTACTGCGGACATACATTTATGAATAAAATGCAAATTTATTAATGAAAAAAAACGG]
consensusID : consensus_5126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[CCGAGGTTANAGGCGCAGAAAAACGAAACNGAATGTGACAGTTGTTGGCCGACAACAATGTGCAAACAACGCGGACACTACAGATGCAACACAAGGGATACAAATATTATCATAAAATCACACACTAGTAATAAAGGCAGCAACTTCCCCCTCCCTCAAACAAACATTCCATCGAAAGCCACACTTGTTCAGAGACGTGGAGAGAGGCAGAAGTGACGACGAGGGAGAGAACGGTACAGTGTTGAGGAAATGCACTTCCAACTTGCATAACGTGGAACATGGAACTGTAATTCAAAGCTCGCTTTTACTATTCCGGCCCCCTTCTGACACTAANTGCGGTTAACAATAGCAATTAATCGCTCTTTTCCGTGCACTCTTTCCCTCTCTCGCTCTCCTTCATATTCTCTCCCTCTCAATAAGGTGTCAATCCAGGCGTATATCGCTCGAACAAACATTGNCATTCTGTTGAAATTGTACCACTGAANATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTCTCATATATCCATTACTGCGTTCAATCCATCAGGACGGTGGAAAAGAATACTCATTACCAATGCATTCACATACTGAAACGAAACCTGGCAGCAAAAGAGACAGAGGTGTAGTATAGTGTGTGTGTAGAAG]
[+] EMBL AL693338 [CCGAGGTTANAGGCGCAGAAAAACGAAACNGAATGTGACAGTTGTTGGCCGACAACAATGTGCAAACAACGCGGACACTACAGATGCAACACAAGGGATACAAATATTATCATAAAATCACACACTAGTAATAAAGGCAGCAACTTCCCCCTCCCTCAAACAAACATTCCATCGAAAGCCACACTTGTTCAGAGACGTGGAGAGAGGCAGAAGTGACGACGAGGGAGAGAACGGTACAGTGTTGAGGAAATGCACTTCCAACTTGCATAACGTGGAACATGGAACTGTAATTCAAAGCTCGCTTTTACTATTCCGGCCCCCTTCTGACACTAANTGCGGTTAACAATAGCAATTAATCGCTCTTTTCCGTGCACTCTTTCCCTCTCTCGCTCTCCTTCATATTCTCTCCCTCTCAATAAGGTGTCAATCCAGGCGTATATCGCTCGAACAAACATTGNCATTCTGTTGAAATTGTACCACTGAANATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTCTCATATATCCATTACTGCGTTCAATCCATCAGGACGGTGGAAAAGAATACTCATTACCAATGCATTCACATACTGAAACGAAACCTGGCAGCAAAAGAGACAGAGGTGTAGTATAGTGTGTGTGTAGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5126#0 ---------CAGGCGCAGAAAAATGAAACAGAATGTGGACAGTTGTTGGCCGACCAACAA 51
consensus_5126#1 CCGAGGTTANAGGCGCAGAAAAACGAAACNGAATGTG-ACAGTTGTTGGCCGAC-AACAA 58
************* ***** ******* **************** *****
consensus_5126#0 TGTGCAAACAACGCGGACAGTACGGATGCAACACAAGGGATACAAATATTATCATAAAAT 111
consensus_5126#1 TGTGCAAACAACGCGGACACTACAGATGCAACACAAGGGATACAAATATTATCATAAAAT 118
******************* *** ************************************
consensus_5126#0 CACACACTAGTAATAAAGGCAGCAACTTCCCCCTTCCTCAAACAAACCATTCCATCGAAA 171
consensus_5126#1 CACACACTAGTAATAAAGGCAGCAACTTCCCCCTCCCTCAAACAAAC-ATTCCATCGAAA 177
********************************** ************ ************
consensus_5126#0 GCCACACTTGTTCAGAG-CG-GGAGAGAGGCAGAAGTGACGA-GAGGGAGAGAACGGTAC 228
consensus_5126#1 GCCACACTTGTTCAGAGACGTGGAGAGAGGCAGAAGTGACGACGAGGGAGAGAACGGTAC 237
***************** ** ********************* *****************
consensus_5126#0 AGTGTTGAGGAAATTCA-TTCCAACTTGCATAAAGTAGAA-ATGGAACTGTAATT-AAAG 285
consensus_5126#1 AGTGTTGAGGAAATGCACTTCCAACTTGCATAACGTGGAACATGGAACTGTAATTCAAAG 297
************** ** *************** ** *** ************** ****
consensus_5126#0 CTCG-TTTTACTATTC-GGCCCCCTTCTGGCAGTTAGGGCGGTTAACAATAGCAATTAAT 343
consensus_5126#1 CTCGCTTTTACTATTCCGGCCCCCTTCTGACACTAANTGCGGTTAACAATAGCAATTAAT 357
**** *********** ************ ** * * **********************
consensus_5126#0 CGCTCTTTTTCGAGCACTATTGCTGTCTCTC--TCTCCTTCATAGTCTCTCCCTCTCAAT 401
consensus_5126#1 CGCTCTTTTCCGTGCACTCTTTCCCTCTCTCGCTCTCCTTCATATTCTCTCCCTCTCAAT 417
********* ** ***** ** * ****** *********** ***************
consensus_5126#0 A-GGTGTCAATC-AGGCGT-TATCGCTCGAACAAACATTGCCATTCTGTTGAAATTGTAC 458
consensus_5126#1 AAGGTGTCAATCCAGGCGTATATCGCTCGAACAAACATTGNCATTCTGTTGAAATTGTAC 477
* ********** ****** ******************** *******************
consensus_5126#0 AACCGAAA-TCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTTTCAT-T 516
consensus_5126#1 CACTGAANATCACACTTCACCAGCACACGGCCGCAAACAAACGATAAAATCGTCTCATAT 537
** *** ******************************************** **** *
consensus_5126#0 ATC-ATTACTGCGTTCAATC-ATCAG-ACGGTGGAAAAGAATACTCATTAC-AATGCATT 572
consensus_5126#1 ATCCATTACTGCGTTCAATCCATCAGGACGGTGGAAAAGAATACTCATTACCAATGCATT 597
*** **************** ***** ************************ ********
consensus_5126#0 -ACATACTGAAACGAACCCTG-TAG-AAAAGAGACAGAGTATGTATTCGTGTGTGTGAAG 629
consensus_5126#1 CACATACTGAAACGAAACCTGGCAGCAAAAGAGACAGAG-GTGTAGTATAGTGTGTGTGT 656
*************** **** ** ************* **** * *******
consensus_5126#0 AGCAGGGATGAGATGAAGCTTTTTGTTCTGTTTTTGCTGATAATGAAATCGAAATGCAAA 689
consensus_5126#1 AGAAG------------------------------------------------------- 661
** **
consensus_5126#0 CAAACGAAACCGTGCTGGACGTACGCTCCCAAGCTCTTCATTGCATCGAATCGTTGTTAA 749
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 TAAGAAACACTCACACCCGACGCAACACACACACACACACCGAAAGCGGTGAGAGTGCAA 809
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 TCAGTGTTGTTGCTGTTGCGGAAACAATAAAATCCTCAAAAACAATAAACCAAGTGGTGC 869
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 AAAGTAAAACTCGAATGCAAAAATAAACATACCCATCTTCTTCTCACTCCCGCACCAGAC 929
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 ATCCGCACCAGGCAACCTCCCCAGAAGAGTATACAATATACATTGAATAAATGGGTTTAC 989
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 AAAAAGGAACCTACAAAAAATAGGTGCATACAGTGGCAACAGCAAAGAACAGGTTTAGTT 1049
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 GCAAGTTCCCCGGGGCAAACCAGAAAAATAACAGACCAGAAATGGCAACCAGCTGTACAG 1109
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 TACGGGCACGCTCCGGTACTGCGGACATACATTTATGAATAAAATGCAAATTTATTAATG 1169
consensus_5126#1 ------------------------------------------------------------
consensus_5126#0 AAAAAAAACGG 1180
consensus_5126#1 -----------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||