|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACATCACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTTCTCGGCTGCAAAAAGGTCTACACGAAAAGCTCCCATCTGAAGGCGCACCAGCGAACGCATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCCTAAGGCATTCGTCTCCAAAACCTTCCACTGCCGTTCGCTCCCGCGAGCAGCACGACGGCTCCAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAAGCGCACGGTAGGAGACAGGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGGTATCTATCTCCCTAGCGCCGATCAGCGTTGCCAGCGTTTCGTTTATGGACGTCCAGTTGAGCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGAAAACCCAAACAA]
[+] EMBL BX621536 [ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACATCACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTTCTCGGCTGCAAAAAGGTCTACACGAAAAGCTCCCATCTGAAGGCGCACCAGCGAACGCATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCCTAAGGCATTCGTCTCCAAAACCTTCCACTGCCGTTCGCTCCCGCGAGCAGCACGACGGCTCCAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAAGCGCACGGTAGGAGACAGGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGGTATCTATCTCCCTAGCGCCGATCAGCGTTGCCAG ]
[+] EMBL BM596616 [ ccGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCTTAAGGCATTCGTCTACAAAACCTTCCACTGCCGTTCGCTCCGGCGAGTGGCACGAAGGCTCTAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAGGCGCACGGTAGGAGGCAAGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAAAGTGTGACGATAGGCAAAACTAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACATTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTATCTCCCTAGCGCCGATCAGCGTTGCTTTCGTTTCGTTTATGGACGTCCAGTTGAGCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGAAAACCCAAACAA]
consensusID : consensus_5131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 882 fasta sequence
[CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAACAACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTAAGCTTGCATTACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACGCCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGAAGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAGGCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGGCAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTCCAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGAAACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGCCTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTACCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCACCCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACACCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC]
[+] EMBL AL693396 [CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAACAACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTAAGCTTGCATTACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACGCCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGAAGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAGGCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGGCAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTCCAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGAAACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGCCTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTACCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCACCCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACACCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC]
consensusID : consensus_5131#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGGAGTTTTTAAAAGCACCCCGAATTGGAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCGGAGATTTTCCACTCCGCACCCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCAACACTGTAGGGGCAGGCAGGGAAATCTATCGTTGGCTTACCCAATTTCACCCCATCATAATCACCTTAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTCCATAGCGCCGATCAGCGTTGCTAGACGCTGTCTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTGTGTTGAGCACGAGAGAGAGAGATAAAAAAGAAACAGTTTTGTACTGATTGAAAACAAAACAAAAAGCGCCATATTGAAGCATTGAAACAGTATAGCAAACACACAAACAGAAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCGCCATTTGTGCTGTTATGTGTTTCCAGAAAACCAACGTCCAAACTGTATGCTGTTGTACTCGGTAAGCCAACAGACTCACATTTATAAACATAAGCAAAATGTGCAAAATGTATTGATTTGTTTAAGTAGCTTAAGTTTCAAAGTTCGGTTTAAGATACCCATGTTTTAAGAATGTGTTCAGTA]
[+] EMBL BM638675 [CCGGAGTTTTTAAAAGCACCCCGAATTGGAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCGGAGATTTTCCACTCCGCACCCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCAACACTGTAGGGGCAGGCAGGGAAATCTATCGTTGGCTTACCCAATTTCACCCCATCATAATCACCTTAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTCCATAGCGCCGATCAGCGTTGCTAGACGCTGTCTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTGTGTTGAGCACGAGAGAGAGAGATAAAAAAGAAACAGTTTTGTACTGATTGAAAACAAAACAAAAAGCGCCATATTGAAGCATTGAAACAGTATAGCAAACACACAAACAGAAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCGCCATTTGTGCTGTTATGTGTTTCCAGAAAACCAACGTCCAAACTGTATGCTGTTGTACTCGGTAAGCCAACAGACTCACATTTATAAACATAAGCAAAATGTGCAAAATGTATTGATTTGTTTAAGTAGCTTAAGTTTCAAAGTTCGGTTTAAGATACCCATGTTTTAAGAATGTGTTCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5131#0 ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACAT 60
consensus_5131#2 ------------------------------------------------------------
consensus_5131#1 ------------------------------------------------------------
consensus_5131#0 CACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTT 120
consensus_5131#2 --CCGGAGTTTTTAAAAGCAC--CCCGAATTGGAAACAATGAACACACTAATCACCATT- 55
consensus_5131#1 ---CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAAC- 56
* * * ** * * ** *
consensus_5131#0 CTCGGCTGCAAAAAGGTCTACAC---GAAAAGCTCCCATCTGAAGGCGCACCAGCGAACG 177
consensus_5131#2 ---GGCTTTGAAACTG-CGAAGC---GGAGATTTTCCACTC-----CGCACC------CC 97
consensus_5131#1 ---AACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTA-AGCTTGCATT-------- 104
* * * * * * * * ***
consensus_5131#0 CATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGA 237
consensus_5131#2 GACTCGGGAAAAAGGC--TATAAATGCC----AAACGTGCATCAACACTGTAGGGGCAGG 151
consensus_5131#1 -ACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGA 163
* ** *** * ** ** ** * * * ** * * * *
consensus_5131#0 AGCGACGAGCTGACGCGCCACTACCGGAAGC-ACACCGGCGCCAAACCCTTCAAGTGCCG 296
consensus_5131#2 CAGGGAAATCTATCGTTGGCTTACCCAATTT-CACCCCATCATAATCACCTTAATCGTAA 210
consensus_5131#1 AGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCG 223
* * ** ** **** * * ** * * * ** *
consensus_5131#0 GCACTGCGATCGTTGCTTTTCCCGCTCCGATCAT-CTTGCGTTGCACATGAAACGGCACG 355
consensus_5131#2 ATCGTTC-ACCTTCTTCTCCGTTTATCCGGTTAT-CTC-CATAGCGC--CGATCAGCGTT 265
consensus_5131#1 GCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACG 283
* * * * * * **** * ** ** * ** * * * *
consensus_5131#0 CCTAAGGCATTCGT-CTCCAAAACCTTCCACTGCCGTTCGCTCCCGC-GAGCAGCA-CGA 412
consensus_5131#2 GCTA-GACGCT-GT-CTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTG-TGT 321
consensus_5131#1 CCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGA 343
*** * * * ** ** * * * * *** * * * ** ** *
consensus_5131#0 CGGCTCC-AGCAGG-CGAAGACAC-AACGAGCAAGAGAGCTTT--ACACCAACGCAGAAG 467
consensus_5131#2 TGAGCAC-GAGAGA-GAGAGATAA-AAAAG---AAACAGTTTT--GTACTGATTGAAAAC 373
consensus_5131#1 AGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAG 403
* * ** *** * ** * * ** * * ** * * *
consensus_5131#0 CGCACGGTAGGAGACAGGCAG-GAGAGGAGAGTTTTT----AAAAGCACCCCG-AATTGG 521
consensus_5131#2 AAAACAAAAAGCGCCATATTG-AAGCATTGAAACAGT----ATAGCAAACACACAAACAG 428
consensus_5131#1 GCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGG 463
* * * * * ** * * * * * * ** *
consensus_5131#0 AAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGT---AAATGTAGAAAATC- 577
consensus_5131#2 AAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCG--CCAT---TTGTGCTGTTATGT- 482
consensus_5131#1 CAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTC 523
*** * **** * * *
consensus_5131#0 ----------GAAACTGGGAAAACAATGA----ACACACTAATCACCATTGGCTTTG-AA 622
consensus_5131#2 ----------GTTTCCAGAAAACCAACGT----CCAAACTGTATGCTGTTGTACTCG-GT 527
consensus_5131#1 CAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGA 583
* * *** *** * ** * ***
consensus_5131#0 ACTGCGAAGCATGGAAA-ACCTCCGCAC-GCCGACTCGGGAAAAAGGCTATAAATGCCA- 679
consensus_5131#2 A------AGC-CAACAG-ACTCACATTT-ATAAACATAAGCAAAATGTGCAAAATG---- 574
consensus_5131#1 AACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGC 643
* * * * * * * *** *
consensus_5131#0 ---AACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAAT 736
consensus_5131#2 -----TATTGATT-TGTTTAAGTAGCTTAAGTTTCAAAGTT-CGGTTTAAGATACCCATG 627
consensus_5131#1 CTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTA 703
** * ** * * ** **
consensus_5131#0 TTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGG 796
consensus_5131#2 TTTTAAGAAT-GTGTTCAGTA--------------------------------------- 647
consensus_5131#1 CCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCAC 763
* *
consensus_5131#0 TATCTATCTCCCTAGCGCCGATCAGCGTTGCCAGCGTTTCGTTTATGGACGTCCAGTTGA 856
consensus_5131#2 ------------------------------------------------------------
consensus_5131#1 CCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACA 823
consensus_5131#0 GCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGA 916
consensus_5131#2 ------------------------------------------------------------
consensus_5131#1 CCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC- 882
consensus_5131#0 AAACCCAAACAA 928
consensus_5131#2 ------------
consensus_5131#1 ------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||