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Anopheles gambiae
cluster # 5133 cluster # 5133       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5133#0 length = 1386 sequences # 3  
consensus_5133#1 length = 414 sequences # 1  

consensusID : consensus_5133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1386
fasta sequence
                              [GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG]

[+] EMBL BX467982             [GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX625533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATGCAGCAGTTGGGTCGACTGCATGCCG TTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGT GATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGA TGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCGCACG AAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG]
[+] EMBL BX620364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGAGGGCGTACCGGGAGCGCATGAGCTCGGCGATACGGGACATGGTGCAATATGGCTACCTGTAAGCTCTCGGGGGCATCGACGCATCTGGCCACCTCCNATGGAATTTGCGATAACATTGCGATATGTGTACGCGTGA  ]


>consensus_5133#0 GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCT GCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATC GAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGG CGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGT GTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGAC TATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCA GGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGC CGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGA CTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCA GCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATT TCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTC GAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAA CCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCT GTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGA ACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGC AGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGG ACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGG AAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGA TGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCA TGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCG AAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGG AGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGG GCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNC GTGACG



consensusID : consensus_5133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence
                              [CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC]

[+] EMBL AL693434             [CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC]


>consensus_5133#1 CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGG CGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTC AGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTA CCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAAC GTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCA TCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGT GTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5133#0      GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCT 60
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATC 120
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGG 180
consensus_5133#1      --------------------------------------------------CCAAGAATTG 10
                                                                        **** **  *

consensus_5133#0      CGATG----GTTTCGTGGGACAAATGTTCAAAGCTTTCCTG-CAAGAGGGCGAACGACGG 235
consensus_5133#1      CCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGG 70
                      *   *    ***************   *  *********** * ****************

consensus_5133#0      GAGGTGTATCT-GTGCAAGA-TTCCACCGCTGAAC-GAGGCACGCCG-TCAGCAGTTCCA 291
consensus_5133#1      GAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCA 130
                      *********** ******** ************** *********** ************

consensus_5133#0      ATCGATGACTATCTTTAG-CCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATAT 350
consensus_5133#1      ATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATAT 190
                      ****************** **** *********************** ************

consensus_5133#0      TCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAAT 410
consensus_5133#1      TCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAAT 250
                      ******************************* ****************************

consensus_5133#0      GTTACTATGCCGA-GNGTGACGAAA--CCACCGAACAG--TCGGTCATCATCATGGAGG- 464
consensus_5133#1      GTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGT 310
                      ************* * *****  **  ***********    *************** * 

consensus_5133#0      -ATCTGCGG--CTGAAGGACTATCG-CATGTGGAATAAGCTGGTGCCCGTG-AACT-ACG 518
consensus_5133#1      GATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACG 370
                       ****** *  ************** ************************* **** ***

consensus_5133#0      AACACGCGCGGCTAACTATGCAGCAGT-TGGGTCGACTGCATGCCGTTTTCGCTTGCGAT 577
consensus_5133#1      AACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTG-ATGCC--------------- 414
                      *************************** *********** *****               

consensus_5133#0      GAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGA 637
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      TGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAG 697
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAA 757
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      TATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCT 817
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      CGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGA 877
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTC 937
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGAT 997
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGA 1057
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      AGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACT 1117
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      GATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGA 1177
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      CGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAA 1237
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      TGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATA 1297
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      TGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCG 1357
consensus_5133#1      ------------------------------------------------------------
                                                                                  

consensus_5133#0      ATAACATTGCGATATGTGTACNCGTGACG 1386
consensus_5133#1      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)