These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [GAATCGCCCGAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGGATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATTCCATTCCAGTTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTACATACCATTGATTATGCTTCGCTCCATTTATACTATTACACCAGCGCCAGTGAATTCGTGCACAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGTGTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACACACATTGTGGGAATTTTCGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGATATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGAAATGCANATATCAAATGTTCGTAAGA] [+] EMBL AL693475 [GAATCGCCCGAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGGATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATTCCATTCCAGTTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTACATACCATTGATTATGCTTCGCTCCATTTATACTATTACACCAGCGCCAGTGAATTCGTGCACAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGTGTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACACACATTGTGGGAATTTTCGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGATATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGAAATGCANATATCAAATGTTCGTAAGA] consensusID : consensus_5135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGACAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATATGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTATTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGNGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAACACATATTGCCCCATCGGATTACGTACATTCTTCAAACTTCCCATTCGCAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATT] [+] EMBL AL931822 [CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGACAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATATGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTATTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGNGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAACACATATTGCCCCATCGGATTACGTACATTCTTCAAACTTCCCATTCGCAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATT] consensusID : consensus_5135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCGGACGCGTGGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGCTGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGACGGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGACCGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCG] [+] EMBL BM607204 [CCGCGGACGCGTGGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGCTGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGACGGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGACCGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCG] consensusID : consensus_5135#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCGGTGAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTCCTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGTGCTTAAACGCGAATCGTGCAGGGCCGTGGTCCAATATCCCCTTTATTCTGTTCCAAACCCAGTTAAAAGCTGCGAAAGGCTTGCTGTGTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTACAGTTTTCCGGGTGTGGGGTCAGTTCCGTGAATCATTCAGCCAGTATCATCGGTTGCTTGCTCTAACTTGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAGGTTCCGCTGAACGGAGTTTGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTTATATGCGATTTGGACTCGGACGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAATACGGCGC] [+] EMBL BM622471 [CCGGTGAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTCCTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGTGCTTAAACGCGAATCGTGCAGGGCCGTGGTCCAATATCCCCTTTATTCTGTTCCAAACCCAGTTAAAAGCTGCGAAAGGCTTGCTGTGTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTACAGTTTTCCGGGTGTGGGGTCAGTTCCGTGAATCATTCAGCCAGTATCATCGGTTGCTTGCTCTAACTTGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAGGTTCCGCTGAACGGAGTTTGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTTATATGCGATTTGGACTCGGACGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAATACGGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5135#2 --------------------------------------------------------CCGC 4 consensus_5135#3 -------------------------------------------------------CCGGT 5 consensus_5135#0 --GAATCGCCC-GAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGC 57 consensus_5135#1 CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGA-GGTAAACA-TTGTGATAAACAAC 58 * consensus_5135#2 GGACGCG--TGGGTACACATA-CACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGC 61 consensus_5135#3 GAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTC 65 consensus_5135#0 GTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGT 117 consensus_5135#1 GCA-GAAATCATGAACGA--CAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGA-ACGG 114 * * * * * * * consensus_5135#2 TGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAG-AGATGGATTTGAAAAATAA- 119 consensus_5135#3 CTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGT-GCTTAAACGCGAATCGTGC- 123 consensus_5135#0 GGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGAC 177 consensus_5135#1 TGCCATACGCGGAACGCTGCTAGCGCAAAA---GTTTATGGACAAAAGCAAAGGAAAGGG 171 * ** * consensus_5135#2 ---AGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTT 176 consensus_5135#3 ---AGG-GCCGTGGT--CCAATATCCCCTTTATTCTGTTCCAAAC--CCAGTTAAAAGCT 175 consensus_5135#0 GGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGG 237 consensus_5135#1 GGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACC 231 * * * consensus_5135#2 GCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGAC 236 consensus_5135#3 GCGAAAGGCTTGCTGT---GTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTAC 232 consensus_5135#0 ATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCA--TGTT 295 consensus_5135#1 GATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGA--T-CC 288 * * consensus_5135#2 GGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGAC 296 consensus_5135#3 AGTTTTCCGGGTGTGGGGTCAGTTC------CGTGAATCATTCAGCCAGTATCAT-CGGT 285 consensus_5135#0 AATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGT-ATCATACAGATTCCATTCCAG 354 consensus_5135#1 GTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTT-ACTGTCCTGGACCGATCGAAA 347 * * * * * consensus_5135#2 CGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAA 356 consensus_5135#3 TGCTTGC-TCTAACTTG-----GTACACATACACGCTGTCAGCGTGCAAACGATAAAAAA 339 consensus_5135#0 TTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTA 414 consensus_5135#1 ACTCGTCATCGCAC-AACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTG 406 * * consensus_5135#2 CATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTG-GGAGCTGGAGGTGGATG 415 consensus_5135#3 GGTTCCGCTGAACGGAGTT----TGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATT 395 consensus_5135#0 CATACCATTGATTATGCTT----CGCTCCATTTATACTATTACACCAGCGCCAGTGAATT 470 consensus_5135#1 GATATGGCTG---GTGTGC----AGCTACAACGAA--TGGAACATGTG-GCCAAAGAGTT 456 * * * * * * * consensus_5135#2 TGAATC--TGAACGGTGCCATACGCG-GAACGCTGCTAGCGCAAAAGTTTATGGACAAAA 472 consensus_5135#3 TGAA-----AAATAAAGTCGCACTTGTGACCGGCGCTGCCAC---------TGGGCTAG- 440 consensus_5135#0 CGTGCA--CAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGT 528 consensus_5135#1 GATACCACTATTAAAAAATGCACCC--ACCGGTTCCATATGGCTAGTG--ACGGNGAGGC 512 ** * * * consensus_5135#2 GCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGC 532 consensus_5135#3 GCAGGGCGTTTAGTGAGGAGTTGCTAA--AACATGGAGCTAAG-GTTGTTAT-ATGC--- 493 consensus_5135#0 GTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACAC 588 consensus_5135#1 AAACCGGCGAAAGAGA-----TACCGTACAGCAGCATTTAAACACATATTGCCCCATCGG 567 * * * * * consensus_5135#2 A-GCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCC 591 consensus_5135#3 --GATTTGGACTCGGA-------CGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAA 544 consensus_5135#0 ACATTGTGGGAATTTT-------CGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGA 641 consensus_5135#1 A--TTACGTACATTCT-------TCAAAC-----------TTCCCATTCGCAGCATTCGA 607 * * * consensus_5135#2 TGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGA 651 consensus_5135#3 TACGGCGC---------------------------------------------------- 552 consensus_5135#0 TATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGA 701 consensus_5135#1 T-TCGTACCA------TATTCATGTTAATTGACCAAGTCC-ACGGTCAAGGGTTAACACA 659 * consensus_5135#2 CCGATCGAAAACTCGTCATCG----- 672 consensus_5135#3 -------------------------- consensus_5135#0 AATGCANATATCAAATGTTCGTAAGA 727 consensus_5135#1 AGCGTATCATACAGATT--------- 676 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||