These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1312 fasta sequence [GACTTCTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTACAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCCATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCGCTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCACTGGGTATTAGTTGCTAGAACTATGATTGTTGCTTACCCGTTACGGTTTACTGCGGATTACCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGGCGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCGACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTTTACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCGGGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACAGCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATTNCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCACCACCAACCAGGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACACCACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCAACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAGCNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTATTAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAATATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCACACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAAACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTNTCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA] [+] EMBL AL693876 [GACTTCTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTACAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCCATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCGCTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCACTGGGTATTAGTTGCTAGAACTATGATTGTTGCTTACCCGTTACGGTTTACTGCGGATTACCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGGCGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCGACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTTTACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCGGGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACAGCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATTNCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCACCACCAACCAGGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACACCACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCAACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAGCNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTATTAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAATATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCACACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAAACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTNTCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA] consensusID : consensus_5141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence [CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAGGAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTGTGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACTTCTTGCTTACGGGTTACACACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACCAACATATA] [+] EMBL BM643539 [CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAGGAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTGTGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACTTCTTGCTTACGGGTTACACACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTA ] [+] EMBL BM598808 [ ccgCACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACCAACATATA] consensusID : consensus_5141#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGCCCACGCGTCCGCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACCATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAAAAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGCCCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTACAACGACTCCATGCGACTGCTTGCGTGGTATACTGTGTAGT] [+] EMBL BM652810 [CCGCCCACGCGTCCGCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACCATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAAAAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGCCCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTACAACGACTCCATGCGACTGCTTGCGTGGTATACTGTGTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5141#1 CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAG 60 consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 ------------------------------------------------------------ consensus_5141#1 GAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTG 120 consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 ------------------------------------------------------------ consensus_5141#1 TGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACT 180 consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 -------------------------------------------------------GACTT 5 consensus_5141#1 TCTTGCTTACGGGTTACACACACACAC-AAGTAGAAAACCACACTGTACACACACATACA 239 consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 CTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACA 65 consensus_5141#1 CACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCA 299 consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 CACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTA-CAGGCAGCCACGTTGCGAACGCA 124 consensus_5141#1 GTAGGCTGTTTTTTCTTATTCT-GTCGCTTCAC-GTCAGTATTGTGG-ACTTTCCTTTCC 356 consensus_5141#2 ----------------------------------------------------CCGCCCAC 8 consensus_5141#0 GTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCC 184 * * consensus_5141#1 ATTG-TTTCTTTACATTT-GTGAAGCGTTAAGGTGAGGG-AAGAAAGAAAAAA--AGTCG 411 consensus_5141#2 GCGT-CCGCTTTACATTT-GTGAAGCGTTAAGGTGAGGG-AAGAAAGAAAAAA--AGTCG 63 consensus_5141#0 ATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCG 244 ********** ********** ********* ***** *** *** ***** consensus_5141#1 TT-CGATTAA-CATCGTACACGGTCCGGTTT-TCCCCTAG--------TTTGTTTGTCTT 460 consensus_5141#2 TT-CGATTAA-CATCGTACACGGTCCGGTTT-TCCCCTAG--------TTTGTTTGTCTT 112 consensus_5141#0 CTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCAC 304 * ******* ******************** ****** * ** * ** consensus_5141#1 TGGGT-TTAGTT-CCACATCTGACTTGATGTGCTTACCG--TACGTTCTGCGATACATTA 516 consensus_5141#2 TGGGT-TTAGTT-CCACATCTGACTTGATGTGCTTACCG--TACGTTCTGCGATACATTA 168 consensus_5141#0 TGGGTATTAGTTGCTAGAACTATGATTGT-TGCTTACCCGTTACGGTTTACTGCGGATTA 363 ***** ****** * * * ** * * ******** **** * * * **** consensus_5141#1 C----------GGCCGT-----------ATTTGCGCATAGAGTAGATAGAAAAGATTGGT 555 consensus_5141#2 C----------GGCCGT-----------ATTTGCGCATAGAGTAGATAGAAAAGATTGGT 207 consensus_5141#0 CCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGG 423 * ***** *** ** **** ** * * ****** consensus_5141#1 ------AAAACCCCCGTTCC--GTCT-GAACAGAG---CATTCC----AGAACGT----- 594 consensus_5141#2 ------AAAACCCCCGTTCC--GTCT-GAACAGAG---CATTCC----AGAACGT----- 246 consensus_5141#0 CGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCG 483 *** **** *** * **** **** ** ****** ***** consensus_5141#1 --GCGAATGGTGAAA---TTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGG 649 consensus_5141#2 --GCGAATGGTGAAA---TTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGG 301 consensus_5141#0 ACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTT 543 * * * ***** *** ** ** * * * ** * * consensus_5141#1 GAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTT 709 consensus_5141#2 GAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTT 361 consensus_5141#0 TACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCG 603 * * ** * ** * * * **** ** * ** consensus_5141#1 CATT--GATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATA-TATA 766 consensus_5141#2 CATT--GATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATA-TATA 418 consensus_5141#0 GGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACA 663 * ** * * * **** **** * * ** * * * * * consensus_5141#1 TATATATACCAACATATA------------------------------------------ 784 consensus_5141#2 TATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACC 478 consensus_5141#0 GCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATT 723 * * * * * * consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAA 538 consensus_5141#0 NCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCA--CCACCAACCA 781 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 AAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGC 598 consensus_5141#0 GGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACAC 841 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 CCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTA----CAACGACTCCATGCGACT 654 consensus_5141#0 CACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCA 901 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 GCTTGCGTGGTATACTG--TGTAGT----------------------------------- 677 consensus_5141#0 ACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAG 961 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 CNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTAT 1021 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 TAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAAT 1081 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 ATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCA 1141 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 CACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAA 1201 consensus_5141#1 ------------------------------------------------------------ consensus_5141#2 ------------------------------------------------------------ consensus_5141#0 ACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTN 1261 consensus_5141#1 --------------------------------------------------- consensus_5141#2 --------------------------------------------------- consensus_5141#0 TCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA 1312 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||