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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1312 fasta sequence
[GACTTCTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTACAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCCATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCGCTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCACTGGGTATTAGTTGCTAGAACTATGATTGTTGCTTACCCGTTACGGTTTACTGCGGATTACCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGGCGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCGACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTTTACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCGGGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACAGCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATTNCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCACCACCAACCAGGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACACCACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCAACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAGCNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTATTAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAATATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCACACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAAACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTNTCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA]
[+] EMBL AL693876 [GACTTCTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTACAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCCATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCGCTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCACTGGGTATTAGTTGCTAGAACTATGATTGTTGCTTACCCGTTACGGTTTACTGCGGATTACCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGGCGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCGACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTTTACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCGGGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACAGCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATTNCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCACCACCAACCAGGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACACCACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCAACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAGCNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTATTAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAATATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCACACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAAACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTNTCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA]
consensusID : consensus_5141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence
[CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAGGAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTGTGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACTTCTTGCTTACGGGTTACACACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACCAACATATA]
[+] EMBL BM643539 [CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAGGAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTGTGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACTTCTTGCTTACGGGTTACACACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTA ]
[+] EMBL BM598808 [ ccgCACACACACAAGTAGAAAACCACACTGTACACACACATACACACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCAGTAGGCTGTTTTTTCTTATTCTGTCGCTTCACGTCAGTATTGTGGACTTTCCTTTCCATTGTTTCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACCAACATATA]
consensusID : consensus_5141#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCCCACGCGTCCGCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACCATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAAAAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGCCCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTACAACGACTCCATGCGACTGCTTGCGTGGTATACTGTGTAGT]
[+] EMBL BM652810 [CCGCCCACGCGTCCGCTTTACATTTGTGAAGCGTTAAGGTGAGGGAAGAAAGAAAAAAAGTCGTTCGATTAACATCGTACACGGTCCGGTTTTCCCCTAGTTTGTTTGTCTTTGGGTTTAGTTCCACATCTGACTTGATGTGCTTACCGTACGTTCTGCGATACATTACGGCCGTATTTGCGCATAGAGTAGATAGAAAAGATTGGTAAAACCCCCGTTCCGTCTGAACAGAGCATTCCAGAACGTGCGAATGGTGAAATTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGGGAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTTCATTGATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATATATATATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACCATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAAAAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGCCCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTACAACGACTCCATGCGACTGCTTGCGTGGTATACTGTGTAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5141#1 CCGCGACCGAGAGGACATTTTGGAGCACGGTAAAGCCGACACCTGCGGCAGCCGTCTTAG 60
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 ------------------------------------------------------------
consensus_5141#1 GAGTAGAGGGTTCGCGTTCGGTTTCCGTTTTGCGCGCTTCCGAGGGATAGGCGAACCGTG 120
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 ------------------------------------------------------------
consensus_5141#1 TGGTTTCGATTCGCCGTCCTCACAGTAGCTACAGAGCTGAAGGGAAGAGACTTCAGGACT 180
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 -------------------------------------------------------GACTT 5
consensus_5141#1 TCTTGCTTACGGGTTACACACACACAC-AAGTAGAAAACCACACTGTACACACACATACA 239
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 CTTGGCTTACGGGTTACACACACACACTAAGTAGAAAACCACACTGTACACACACATACA 65
consensus_5141#1 CACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTAGCAGGCAGCCACGTTGCGAACGCA 299
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 CACCGTGGTGGTGATGTTTTAAATCGCGGGCTCCTA-CAGGCAGCCACGTTGCGAACGCA 124
consensus_5141#1 GTAGGCTGTTTTTTCTTATTCT-GTCGCTTCAC-GTCAGTATTGTGG-ACTTTCCTTTCC 356
consensus_5141#2 ----------------------------------------------------CCGCCCAC 8
consensus_5141#0 GTAGGCTGTTTTTTCTTATTCTTGTCGCTTCACTGTCAGTATTGTGGCACTTTCCTTTCC 184
* *
consensus_5141#1 ATTG-TTTCTTTACATTT-GTGAAGCGTTAAGGTGAGGG-AAGAAAGAAAAAA--AGTCG 411
consensus_5141#2 GCGT-CCGCTTTACATTT-GTGAAGCGTTAAGGTGAGGG-AAGAAAGAAAAAA--AGTCG 63
consensus_5141#0 ATATGTTTCTTTACATTTTGTGAAGCGTTTAGGTGAGGGCAAGAANGAACAAACAAGTCG 244
********** ********** ********* ***** *** *** *****
consensus_5141#1 TT-CGATTAA-CATCGTACACGGTCCGGTTT-TCCCCTAG--------TTTGTTTGTCTT 460
consensus_5141#2 TT-CGATTAA-CATCGTACACGGTCCGGTTT-TCCCCTAG--------TTTGTTTGTCTT 112
consensus_5141#0 CTGCGATTAAACATCGTACACGGTCCGGTTTACCCCCTAAGTACAGTACTGGTCTCTCAC 304
* ******* ******************** ****** * ** * **
consensus_5141#1 TGGGT-TTAGTT-CCACATCTGACTTGATGTGCTTACCG--TACGTTCTGCGATACATTA 516
consensus_5141#2 TGGGT-TTAGTT-CCACATCTGACTTGATGTGCTTACCG--TACGTTCTGCGATACATTA 168
consensus_5141#0 TGGGTATTAGTTGCTAGAACTATGATTGT-TGCTTACCCGTTACGGTTTACTGCGGATTA 363
***** ****** * * * ** * * ******** **** * * * ****
consensus_5141#1 C----------GGCCGT-----------ATTTGCGCATAGAGTAGATAGAAAAGATTGGT 555
consensus_5141#2 C----------GGCCGT-----------ATTTGCGCATAGAGTAGATAGAAAAGATTGGT 207
consensus_5141#0 CCACTTTACCGGGCCGCTATTTTGCGGCATTAGCAGTTAGATTATGGAACANCGATTGGG 423
* ***** *** ** **** ** * * ******
consensus_5141#1 ------AAAACCCCCGTTCC--GTCT-GAACAGAG---CATTCC----AGAACGT----- 594
consensus_5141#2 ------AAAACCCCCGTTCC--GTCT-GAACAGAG---CATTCC----AGAACGT----- 246
consensus_5141#0 CGTACAAAAGCCCCNGTTTCCGGTCTTGAACCAAGAGGCATTCCCAAGGAAACGTTGCCG 483
*** **** *** * **** **** ** ****** *****
consensus_5141#1 --GCGAATGGTGAAA---TTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGG 649
consensus_5141#2 --GCGAATGGTGAAA---TTCGGGAATCGAACACGGGTGCTGCTTACGCGTCTACGCGGG 301
consensus_5141#0 ACACTTACGTTGAAACATTTCNGGGGGNCAATTCTGAAACCACTGGGGTTTGCCTTGCTT 543
* * * ***** *** ** ** * * * ** * *
consensus_5141#1 GAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTT 709
consensus_5141#2 GAAACAACGCGCGTATTTCGTTTACTTTGCTAGAAAATTAAAACTCCCGCACCATCGCTT 361
consensus_5141#0 TACAGGCCGGATNTCCTTAAACCGGCCCGGTGGTGGGACAAAAACCCAAAAAGGCCGGCG 603
* * ** * ** * * * **** ** * **
consensus_5141#1 CATT--GATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATA-TATA 766
consensus_5141#2 CATT--GATGGTGTGCATATTTAAAAGAAACATATATAAGAAACAAATATATATA-TATA 418
consensus_5141#0 GGGTTAAATNTNGACCCGGGGNGCTATAAACCCATATGGGGCGCTAAAGGACACAACACA 663
* ** * * * **** **** * * ** * * * * *
consensus_5141#1 TATATATACCAACATATA------------------------------------------ 784
consensus_5141#2 TATATATACAAACATATATCGATATACAGAGAATACAAAACACACACACACACATTAACC 478
consensus_5141#0 GCTTTTNANCAGAACTTTCCCCCGGGGNGCAGAAACCCNACTCCGGCACATTCACCAATT 723
* * * * * *
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ATACGACCGTGAGCGCAAACAGTGCAAGCCCGCGAATACATTAATTAAAGTGAGTAATAA 538
consensus_5141#0 NCGGGACTTGCGGTNTGGACTTGGTACCCCCCCTTTAACTTTGCCTCA--CCACCAACCA 781
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 AAGAATTGTGATATTTACACACGTGTGATTGGTTTGCAATTGGCATGCGACGCGTTTCGC 598
consensus_5141#0 GGGTAACACANACCCCCCNATTTGACCTTTACTTTACCATCGAAACAACNANCCCCACAC 841
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 CCAATCGCTCTGCGTACTGGGTCATGTCCCACGTGCTA----CAACGACTCCATGCGACT 654
consensus_5141#0 CACTCCCATCACANTTGNNCTTTAACCTTTAAATTTTAATCCCAACAAACCCAAACTTCA 901
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 GCTTGCGTGGTATACTG--TGTAGT----------------------------------- 677
consensus_5141#0 ACTTTCNTNTTCCNCCAATTNCAGTCTTANANACCCAAGCCCATGCANCACAANTTTAAG 961
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 CNCACANACAACAGACNCCAAACCCNCACCCACACACAATNNTAGANCCCAACAGATTAT 1021
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 TAGTAAAANCTCCNACCCCAAACGTTTAATCACTNCGGGCGAAAACAACCCNGGCGCAAT 1081
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 ATGNAAAAGCTGGCCNGGTGTCCACTAAAACTANCACGACCGCAGGAGACTGGGCCGCCA 1141
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 CACATGGTNCCTCCCCCCNGGGTNCGGGCCCCCACGNTATAATCCCGAGCGATTTTTCAA 1201
consensus_5141#1 ------------------------------------------------------------
consensus_5141#2 ------------------------------------------------------------
consensus_5141#0 ACCGANCGTCTTTATACCNAACACCAACGGGACGTATGGGAAAAGGGCCTATAATANCTN 1261
consensus_5141#1 ---------------------------------------------------
consensus_5141#2 ---------------------------------------------------
consensus_5141#0 TCTCACACCTAAANACGCNTCAACAACTATAGNCGGCGTNTTGGNCAAACA 1312
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||