These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence [TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA] [+] EMBL CNS09AYT [TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA] consensusID : consensus_5144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC] [+] EMBL AL693946 [GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC] [+] EMBL BX617305 [ aAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGT TAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTGTAGAATCGT TTGAT TTGTTAAG CGAAATGAATCAATTCCAA AAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAA AAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTTGCACCCT TTCCTGCTTTAAGCAGACT CGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAA CTTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT CTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGat ] consensusID : consensus_5144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT] [+] EMBL BX615809 [TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5144#0 TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCA 60 consensus_5144#2 -------------------------------TGCTCCTATCGTGCTGTTTCGCACATCCA 29 consensus_5144#1 -----------GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCA 49 * ******** ****************** consensus_5144#0 ACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAA-TGTTTAATCGA 119 consensus_5144#2 ACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAA-TGTATAATCGA 88 consensus_5144#1 ACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGA 109 ****************** ********* ** *** ******** ** *** ******* consensus_5144#0 GCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTT-TGAT-TTG 177 consensus_5144#2 GCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTT-TGAT-TTG 146 consensus_5144#1 AGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTG 169 ******************* ******* ********** ********* **** *** consensus_5144#0 TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 235 consensus_5144#2 TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGCTCAAGAAAGTTTCAGCTCTGCAT 204 consensus_5144#1 TTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 229 ***** **************** ** ** ******* ** ******************* consensus_5144#0 CATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGT 295 consensus_5144#2 CATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGT 264 consensus_5144#1 CATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGT 289 ********** ****************** ****** ****** * *** ********* consensus_5144#0 TGGTA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCTTG 353 consensus_5144#2 TGGAA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCCTG 322 consensus_5144#1 TGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTG 349 *** * ******* ************************************** *** ** consensus_5144#0 CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-ATTACGCCAA 411 consensus_5144#2 CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-CTTACGCCAA 380 consensus_5144#1 CTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAA 409 ************* *************** ******************* ********* consensus_5144#0 CAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 470 consensus_5144#2 CAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 439 consensus_5144#1 CAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCA 469 ***** * ************************************** **** ******** consensus_5144#0 CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 525 consensus_5144#2 CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 494 consensus_5144#1 CTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATA 529 **************************** ********* ********* ** ****** consensus_5144#0 CGTGGTAACAAATCCTTTCAACA-GTGGTAATACCTTCAAGTCAATGTCCAATCGTCAAT 584 consensus_5144#2 CGTGGTAACAAATCCTTTCAACA-GTG--------------------------------- 520 consensus_5144#1 CGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGT---------------- 573 ****** ************* * *** consensus_5144#0 GGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCG 644 consensus_5144#2 -----------------------------------------------ATAAGATAAACCG 533 consensus_5144#1 -----------------------------------------------CAATGTCCAATCG 586 * * ** ** consensus_5144#0 CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 704 consensus_5144#2 CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 593 consensus_5144#1 TCCACATGTTGA-CGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC--------- 636 * * * * ** *** * * *** *** ** ** * ** consensus_5144#0 CCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACG 764 consensus_5144#2 CCGTGACACCT------------------------------------------------- 604 consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 CCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGAC 824 consensus_5144#2 ------------------------------------------------------------ consensus_5144#1 ------------------------------------------------------------ consensus_5144#0 GGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA 861 consensus_5144#2 ------------------------------------- consensus_5144#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||