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Anopheles gambiae
cluster # 5144 cluster # 5144       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5144#0 length = 861 sequences # 1  
consensus_5144#1 length = 636 sequences # 2  
consensus_5144#2 length = 604 sequences # 1  

consensusID : consensus_5144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 861
fasta sequence
                              [TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA]

[+] EMBL CNS09AYT             [TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA]


>consensus_5144#0 TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCA ACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAG CTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTA AGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCT TCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTA AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAG CAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACC ATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTAC GTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCC TTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAA TAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGA AGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCA GATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGAT TGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTT GAATGGAATCTGGTAAATTAA



consensusID : consensus_5144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence
                              [GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC]

[+] EMBL AL693946             [GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC]
[+] EMBL BX617305             [             aAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGT TAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTGTAGAATCGT TTGAT TTGTTAAG CGAAATGAATCAATTCCAA AAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAA AAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTTGCACCCT TTCCTGCTTTAAGCAGACT CGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAA CTTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT CTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGat                                                                                                                                         ]


>consensus_5144#1 GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCA GCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGC TGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAA TGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAA TCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTT GGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGA CTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACAT CAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACG TAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAA ATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACG ACCGNGCATANACTAANGGATGGCGTAAGAACTGCC



consensusID : consensus_5144#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT]

[+] EMBL BX615809             [TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT]


>consensus_5144#2 TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCA TCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAAC TTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAG CTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACA CCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACC AAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCC ACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTA TGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGT TGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCT ATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGAC ACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5144#0      TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCA 60
consensus_5144#2      -------------------------------TGCTCCTATCGTGCTGTTTCGCACATCCA 29
consensus_5144#1      -----------GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCA 49
                                                     * ******** ******************

consensus_5144#0      ACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAA-TGTTTAATCGA 119
consensus_5144#2      ACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAA-TGTATAATCGA 88
consensus_5144#1      ACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGA 109
                      ****************** ********* ** *** ********  ** *** *******

consensus_5144#0      GCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTT-TGAT-TTG 177
consensus_5144#2      GCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTT-TGAT-TTG 146
consensus_5144#1      AGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTG 169
                        ******************* ******* ********** *********  **** ***

consensus_5144#0      TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 235
consensus_5144#2      TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGCTCAAGAAAGTTTCAGCTCTGCAT 204
consensus_5144#1      TTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 229
                      ***** **************** ** ** *******  ** *******************

consensus_5144#0      CATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGT 295
consensus_5144#2      CATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGT 264
consensus_5144#1      CATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGT 289
                      ********** ******************  ****** ****** * *** *********

consensus_5144#0      TGGTA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCTTG 353
consensus_5144#2      TGGAA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCCTG 322
consensus_5144#1      TGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTG 349
                      *** *  ******* ************************************** *** **

consensus_5144#0      CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-ATTACGCCAA 411
consensus_5144#2      CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-CTTACGCCAA 380
consensus_5144#1      CTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAA 409
                      ************* *************** *******************  *********

consensus_5144#0      CAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 470
consensus_5144#2      CAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 439
consensus_5144#1      CAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCA 469
                      ***** * ************************************** **** ********

consensus_5144#0      CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 525
consensus_5144#2      CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 494
consensus_5144#1      CTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATA 529
                      ****************************  ********* ********* **  ******

consensus_5144#0      CGTGGTAACAAATCCTTTCAACA-GTGGTAATACCTTCAAGTCAATGTCCAATCGTCAAT 584
consensus_5144#2      CGTGGTAACAAATCCTTTCAACA-GTG--------------------------------- 520
consensus_5144#1      CGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGT---------------- 573
                      ****** ************* *  ***                                 

consensus_5144#0      GGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCG 644
consensus_5144#2      -----------------------------------------------ATAAGATAAACCG 533
consensus_5144#1      -----------------------------------------------CAATGTCCAATCG 586
                                                                       * *   ** **

consensus_5144#0      CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 704
consensus_5144#2      CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 593
consensus_5144#1      TCCACATGTTGA-CGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC--------- 636
                        * * * * ** ***  * *     ***   *** **  **    *  **         

consensus_5144#0      CCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACG 764
consensus_5144#2      CCGTGACACCT------------------------------------------------- 604
consensus_5144#1      ------------------------------------------------------------
                                                                                  

consensus_5144#0      CCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGAC 824
consensus_5144#2      ------------------------------------------------------------
consensus_5144#1      ------------------------------------------------------------
                                                                                  

consensus_5144#0      GGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA 861
consensus_5144#2      -------------------------------------
consensus_5144#1      -------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)