These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 908 fasta sequence [CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGTTTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGT-CCGGTAG-ATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCC-TCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAA-CACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGCTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTATTGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGAAGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACCAAACAACANCNAAAANA] [+] EMBL BX621420 [CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGTTTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGT CCGGTAG ATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCC TCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAA CACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGT ] [+] EMBL AL694045 [ AGAGGGAAATGAGAAGCAA TTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAA CAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCCGGTAGCATG TTTCCTCTNAAATGACACTCCCTTTTGCTG CTCTCCA CTTACCACGGTGCTGATATTACCCCCCATCCCTTGTGCACCGCTCTCCTCCTTCACG TTCTTCCATTGTGATGCG TTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACCACACACACACACACGCTTCCATCATCCCTCCCCCCGGAGCTGCAGCGGTTTGAAACCTGGCTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTATTGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGAAGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACCAAACAACANCNAAAANA] consensusID : consensus_5145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTAGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCACTT] [+] EMBL BM625055 [CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTAGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCACTT] consensusID : consensus_5145#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCGGTAGATGTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACATACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACCCACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAGGAAAAAGAAGAAAAGAAAA] [-] EMBL BM605930 [CAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCGGTAGATGTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACATACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACCCACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAGGAAAAAGAAGAAAAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5145#0 CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGT 60 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 TTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTC 120 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 ATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGT 180 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 GTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGT 240 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 GATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGT 300 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 ACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAA 360 consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 CAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTC 420 consensus_5145#2 ------------------------------CAAATATTGTAGAGGGGCGCGCGCCACGTC 30 consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 GCAATAGGGTCCGGTAGATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCC 480 consensus_5145#2 GCAATAGGGTCCGGTAGATGTTTTTTTTTTTT-AATGACACTCCCTTTTGCTGCCTCTCC 89 consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 ACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTT 540 consensus_5145#2 ACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTT 149 consensus_5145#1 ---------CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTT 51 * ** * * * **************************** consensus_5145#0 TTTTTT--ATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 598 consensus_5145#2 TTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 209 consensus_5145#1 TTTTTT--ATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 109 ****** **************************************************** consensus_5145#0 TCAAAGGAGCAAACACACACACA------CACACGCTTCCATCATCCCTCCCCCCGCAGC 652 consensus_5145#2 TCAAAGGAGCAAACACACACACATA----CACACGCTTCCATCATCCCTCCCCCCGCAGC 265 consensus_5145#1 TCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGC 169 *********************** ******************************* consensus_5145#0 TGCAGCGGTTTGAAACCTGG-CTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTC 711 consensus_5145#2 TGCAGCGGTTTGAAACCTGGGCTCCGTGGTGG-GGTGTGAGGGTGACGCACGACACCTTC 324 consensus_5145#1 TGCAGCGGTTTGAAACCTGGGCTCCGTGGTGG-GGTGTGAGGGTGACGCACGACACCTTC 228 ******************** ******* *** *************************** consensus_5145#0 CGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTAT 771 consensus_5145#2 CGCTGGTGG-TCGACCTTTTTT--TATGTACAG--CCGGTCGCCGGATAAGTAAAC-TAT 378 consensus_5145#1 CGCTAGTGG-TCGACCTTTTTT--TATGTACAG--CCGGTCGCCGGATAAGTAAAC-TAT 282 **** **** ******** ***** * ********************* *** consensus_5145#0 TGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGA 831 consensus_5145#2 G--CCCTCTTAT-ACACCCACA-CCCACA-CACACAA-TCAC-TGCACTTTGGTTTGGTA 431 consensus_5145#1 G--CCCTCTTAT-ACACCCACA---CACA-CACACAA-TCAC-TGCACTTTGGTTTGGTA 333 ********* ********* **** ******* **** ************ * consensus_5145#0 AGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACC 891 consensus_5145#2 GG--------CGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACA 483 consensus_5145#1 GG--------CGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACA 385 * * * * * *** ** ********* ***** ******* ** consensus_5145#0 AAACAACANCNAAAANA------------------------------------------- 908 consensus_5145#2 AACAAGGAAAAAGAAGAAAAGAAAA----------------------------------- 508 consensus_5145#1 AACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAG 445 ** * * * ** * consensus_5145#0 ------------------------------------------------------------ consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 AAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGA 505 consensus_5145#0 ------------------------------------------------------------ consensus_5145#2 ------------------------------------------------------------ consensus_5145#1 AAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCA 565 consensus_5145#0 --- consensus_5145#2 --- consensus_5145#1 CTT 568 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||