These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [CAGAATCGCCCCGCACGGTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCA-GCA-GATAGAGGTCGTTGCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGCCGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGGGGGGGTAAGAAGGAAAGTAAGAAAAACGGGGTTTGGCCTAACCGGGAAAAGGGGTTAACCCAATTGGTTAACCGGAACATTAACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTTTGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTGGGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAACCCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGGAAACTTAGCGAAAAGAACNCGACGGGGCACAAGGTATTAACACCTTGGGTTGGGCAACACCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAANACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGNCCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGNACGTGGGCCNGCCCCCTTGGTTGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTTGGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG] [+] EMBL AL696100 [CAGAATCGCCCCGCACGGTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCA GCA GATAGAGGTCGTT ] [+] EMBL AL694151 [ AATCGCCCCG A GGTT A CTC AAAAGAAACATT GTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTC TTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGA TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGGCAGGATAGA GTCTTTGCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGCCGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGGGGGGGTAAGAAGGAAAGTAAGAAAAACGGGGTTTGGCCTAACCGGGAAAAGGGGTTAACCCAATTGGTTAACCGGAACATTAACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTTTGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTGGGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAACCCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGGAAACTTAGCGAAAAGAACNCGACGGGGCACAAGGTATTAACACCTTGGGTTGGGCAACACCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAANACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGNCCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGNACGTGGGCCNGCCCCCTTGGTTGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTTGGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG] consensusID : consensus_5146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [AGATCGGCACAGGCATTGTACAGCATGACAAAATTGCTTGTATTTGCTGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGGAAGAAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAATCGGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACTCGT] [+] EMBL BX466439 [AGATCGGCACAGGCATTGTACAGCATGACAAAATTGCTTGTATTTGCTGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGGAAGAAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAATCGGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACTCGT] consensusID : consensus_5146#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGAAGGAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCGGGAAGTGTGCGATCATCCAGAGAACGTGGAAT] [+] EMBL BX468379 [GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGAAGGAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCGGGAAGTGTGCGATCATCCAGAGAACGTGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5146#1 ----------------------AGATCGGCAC-AGGCATTG-TACAGCATGACAAAATTG 36 consensus_5146#2 -GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTG-TACAGCATGACAAAATTG 58 consensus_5146#0 CAGAATCGCCCCGCACG-GTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTG 59 ** * * ***** ****************** consensus_5146#1 CTTGTATTTGCTG-CTTGTGCTGCCTCTT-AGGAGCTGGACTGGCTTCTTTCCAACGTCA 94 consensus_5146#2 CTTGTATTTGCTGGCTTGTGCTGCCTCTT-AGGAGCTGGACTGGCTTCTTTCCAACGTCA 117 consensus_5146#0 CTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCA 119 ************* *************** ****************************** consensus_5146#1 AACAAAACTGA-TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 153 consensus_5146#2 AACAAAACTGA-TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 176 consensus_5146#0 AACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 179 *********** ************************************************ consensus_5146#1 GC---GAAGGTCAAACAGAT-----GGAACTCTATTCCCCTC-----TAGTTAATT--GC 198 consensus_5146#2 GC---GAAGGTCAAACAGAT-----GGAACTCTATTCCCCTC-----TAGT-AATT--GC 220 consensus_5146#0 GCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGC 239 ** * ********** * **** *** ** * ** * **** ** consensus_5146#1 TCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGT 258 consensus_5146#2 TCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGT 280 consensus_5146#0 CGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGG-GGGGGTAAGAAGGAAAGTAAGAAAA 298 *** ** * * * * *** ** *** * * * * * * consensus_5146#1 ACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACG 318 consensus_5146#2 ACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACG 340 consensus_5146#0 ACGGGGTTTGGC--CTAAC-CGGGAAAAGGGGTTAACCCAA-TTGGTTAACCGGAACATT 354 ** ** * * * *** ** * * * * * *** * ** ** * * * * consensus_5146#1 GA--AGAAAATCG-CTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAA---C 372 consensus_5146#2 GA--AGAAAATCG-CTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAA---C 394 consensus_5146#0 AACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTT 414 * *** * ** * * * *** * ***** ** ** ** ** * consensus_5146#1 TGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGG-------AAGTTACCTG 425 consensus_5146#2 TGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGG-------AAGTTACCTG 447 consensus_5146#0 TGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTG 474 ** ** *** * * * * * **** * ** ***** consensus_5146#1 TGCACCGG-------CTGGAACACTATTT-------------GATTACCAGCGAGAAGTC 465 consensus_5146#2 TGCACCGG-------CTGGAACACTATTT-------------GATTACCAGCGAGAAGTC 487 consensus_5146#0 GGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAAC 534 * * * **** * ** * * **** * *** * consensus_5146#1 TGTGACCATCCAGAAAA---CGTGCAGTGTTATGA---AGGAGGCGCCTGTG---CTGGT 516 consensus_5146#2 TGTGACCATCCAGAAAA---CGTGCAGTGTTATGA---AGGAGGCGCCTGTG---CTGGT 538 consensus_5146#0 CCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGG 594 ** * ** **** * * *** * *** *** * ** consensus_5146#1 AGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAA-A 575 consensus_5146#2 AGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAA-A 597 consensus_5146#0 AAACTTAGCGAAAAGAACNCGACGGGGCACAAG-GTATTAACACCTTGGGTTGGGCAACA 653 * * * ** * * ** *** ** *** **** * ** * consensus_5146#1 TGAAGACATTGCCGGAAGAA---AATCACATG----CCAGCCTCAA----GGAACATTAT 624 consensus_5146#2 TGAAGACATTGCCG-AAGGA---AATCACATG----CCAGCCTCAA----GGAACATTAT 645 consensus_5146#0 CCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAAN 713 * * *** ** * *** * ** *** ** * ** * * consensus_5146#1 TCGACTGGC---AGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAAT 681 consensus_5146#2 TCGACTGGC---AGC-GGGAAGTGTGCGATCATCCAGAG--AACGTGGAAT--------- 690 consensus_5146#0 ACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGN 773 ** * * * ***** * *** ** ** consensus_5146#1 C--GGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACT 739 consensus_5146#2 ------------------------------------------------------------ consensus_5146#0 CCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGN-ACGTGGGCCNGCCCCCTTGGT 832 consensus_5146#1 CGT--------------------------------------------------------- 742 consensus_5146#2 ------------------------------------------------------------ consensus_5146#0 TGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTT 892 consensus_5146#1 ------------------------------------ consensus_5146#2 ------------------------------------ consensus_5146#0 GGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG 928 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||