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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence
[TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGT-CGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTA-AAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATCCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAAGAAAGTCCTCTTGGAGCATCATTATCCAGCGCACTGGAATCGATTGCTCAGCCCGCAGTCGTAATGCATCCGAAGACGAGGGCGAGTCCTCTTGAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGGAGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNATCTGCCGTCGGTATGAATNCCAAGACGAANGAAATTCTTCCAGGANGAGCTGCTTTAACCAGCGCACCGAAACACCTTAACCCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATTAACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGAAATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTATCGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCCGCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAACAAAAGGCAGCATGTGC]
[+] EMBL BX622370 [TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGT CGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTA AAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATCCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAAGAAAGTCCTCTTGGAGCATCATTATCCAGCGCACTGGAATCGATTGCTCAGCCCGCAGTCGTAATGCATCCGAAGACGAGGGCGAGTCCTCTTGAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGGAGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNATCTGCCGTCGGTATGAATNCCAAGACGAANGAAATTCTTCCAGGANGAGCTGCTTTAACCAGCGCACCGAAACACCTTAACC ]
[+] EMBL BX622551 [ AGTGCGTAATGCTTCNGAANACAGAGGAAAGTCCTCTAGGAGCTACATCNACCAGCGCATTGGAACTGCTAAAACNACCTGCTGTCGGTATGGATCGNANGACTATGAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTACGCCCGCNGTCGTAA ]
[-] EMBL BX466683 [ CGAGTCCTCTTGAAGCATCAACCAGCACNCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAAGGCAAGTCCTCTGGGAGCTACATCGTCCAGTGCCCCGGAACCGCTTAAACAATCTGCCGTCGGTATGAATCCCAAGACGAAGGAAATTCTTCCAGGAGGAGCTGCTGTAACCAGCGCACCGAAACACCTTAAACCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATTAACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGAAATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTATCGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCCGCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAACAAAAGGCAGCATGTGC]
consensusID : consensus_5147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[GCAGAATCCCCCCGAGGTTTAAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATCATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGACGAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAGGCACAGGAATCGATTAATCAGCCGCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGGAGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCCAAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCACGAAACACTTAAACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAATCTCCTGGAGGTGTACATACCAGGCACGGA]
[+] EMBL AL694171 [GCAGAATCCCCCCGAGGTTTAAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATCATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGACGAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAGGCACAGGAATCGATTAATCAGCCGCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGGAGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCCAAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCACGAAACACTTAAACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAATCTCCTGGAGGTGTACATACCAGGCACGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5147#0 TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCC 60
consensus_5147#1 -----------------------------------------------GCAGAATCCCCCC 13
* *** * **
consensus_5147#0 GAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACA 120
consensus_5147#1 GAGGTTT----AAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACA 69
** * *********** ************************ ************
consensus_5147#0 ACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTAT-CCA 179
consensus_5147#1 ACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCA 129
******************************************************** ***
consensus_5147#0 GCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCAT-CCGAAGATGAAGGAAAGT 238
consensus_5147#1 GCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGT 189
***************************************** ******************
consensus_5147#0 CTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGC-AGTCGTAAT 297
consensus_5147#1 CTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAAT 249
************************************************** *********
consensus_5147#0 GCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCT 357
consensus_5147#1 GCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCT 309
************************************************************
consensus_5147#0 AAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAA--GAAAGTCCT-CTTGGAGCATC 414
consensus_5147#1 AAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATC 369
********************************* *** ********* ***********
consensus_5147#0 ATTATCCAGCGCACTGG-AATCGATTGCTCAGCCCGCAGTCGT-AATGCATCC-GAAGAC 471
consensus_5147#1 ATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGAC 429
*************** * ************************* ********* ******
consensus_5147#0 GAGGGCGAG-TCCTCTTGAA-GCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCA 529
consensus_5147#1 GAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCA 489
********* ********** ***************************************
consensus_5147#0 GTCGAAATGCATCCGAAGAT-GAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACA 588
consensus_5147#1 GTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAG-GCACA 548
******************** ** *** ************************** *****
consensus_5147#0 GGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGG 648
consensus_5147#1 GGAATCGATTAATCAGCC-GCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGG 607
**** ************* ******************* ****** ****** *******
consensus_5147#0 AGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNA-TCTGCCGTCGG-TATGAATNCC 706
consensus_5147#1 AGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCC 667
***************** ** * * * ******** * *********** ******* **
consensus_5147#0 AAGACGAANGAAATTCTTCCAGGANG-AGCTGCTTTAACCAGCGCACCGAAACACCTTAA 765
consensus_5147#1 AAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCAC-GAAACAC-TTAA 725
**** * ** *********** * ******************** ******* ****
consensus_5147#0 CCCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATT 825
consensus_5147#1 ACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAAT--CTCCTGGAGGTG-TACAT- 781
**** ******** * *** ****** ***** *********** *****
consensus_5147#0 AACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGA 885
consensus_5147#1 -ACCAG--GCACGGA--------------------------------------------- 793
***** ****
consensus_5147#0 AATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTAT 945
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 CGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCC 1005
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAA 1065
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 CAAAAGGCAGCATGTGC 1082
consensus_5147#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||