These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence [AGAATCGCCCGAGGT-T--ATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTAT-CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGT-CGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG-GCCGCTTCGTGCCTG-TTTGGCCGTTCGACTGCGGACAC-GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA-GGG-TGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACT-TTGCATCGGCCACGCTGGCCAA-GACGTTGCGGTGGCTCGTGTGG-ACAG-AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGCTTGGCTCGTACAACATTAACGTGG-CTACAGGAGCCCTTGTGTCCGGTATGGGGTCGTACCGAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCGCAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACCATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTGATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTATCCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC] [+] EMBL AL934584 [AGAATCGCCCGAGGT T ATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTAT CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTACGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG GCCGCTTCGTGCCTG TTTGGCCGTTCGACTGCGGACAC GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA GGGTTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTNTTGCATCGGCCACGCTGGCCAA ] [+] EMBL AL930099 [ GAATTGCCCGAGGTNTCGGTTCGTTAGTATNGTGGGAACGTGAGCGTCCGCAAAATGTATNTGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGGTCTAACAGCAGTGGAAGGGTCGGATCGT CGGTGGCACTTACGCACGTNATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGTGGCGCTTCGTGCCTGTTTTGGGCGTTCGACTGCGGACACTGCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCACGGG TGGCTTCAATCTCGG CTGCGACGCATCGTCATCCATCCCAACT TTGCATCGG CACGCTGG CAA GACGTTGCGGTGGCTCGTGTGG ACAG AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGCTTGGCTCGTACAACATTAACGTGG CTACAGGAGCCCTTGTGTCCGGTATGG ] [+] EMBL BX627763 [ TCGTGGGAACGTGAGCGTCCGCAAAATGTAT CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGT CGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG GCCGCTTCGTGCCTG TTTGGCCGTTCGACTGCGGACAC GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA GGG TGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACT TTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGC AGCTTGGCTCGTACAACATTAACGTGGCCTAC GGAGCCCTTGTGTCCGGT TGGGGTCGTACCGAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCGCAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACCATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTGATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTATCCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC] consensusID : consensus_5148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [AGGTTTTAGGTTCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTCGACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCAGCTTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGTTGGGGTCGTACCGAGTTCTCCAACCCCAGTTCCCGGA] [+] EMBL AL694188 [AGGTTTTAGGTTCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTCGACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCAGCTTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGTTGGGGTCGTACCGAGTTCTCCAACCCCAGTTCCCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5148#0 AGAATCGCCCGAGGTTATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTATCG 60 consensus_5148#1 ----AGGTTTTAGGT---TCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCG 53 * **** **************************** ********** consensus_5148#0 CAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGC 120 consensus_5148#1 CAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGC 113 ************************************************************ consensus_5148#0 GACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACG 180 consensus_5148#1 GACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACG 173 ************************************************************ consensus_5148#0 TGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGG 240 consensus_5148#1 TGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGG 233 ************************************************************ consensus_5148#0 TGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTC 300 consensus_5148#1 TGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTC 293 ************************************************************ consensus_5148#0 GACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCAGGGTGGCTTCAATCT 360 consensus_5148#1 GACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCT 353 ***************************************** ****************** consensus_5148#0 CGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAA-GACGT 419 consensus_5148#1 CGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGT 413 ****************************************************** ***** consensus_5148#0 TGCGGTGGCTCGTGTGG-ACAG-AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGC 477 consensus_5148#1 TGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCA-GC 472 ***************** **** ************ ********************* ** consensus_5148#0 TTGGCTCGTACAACATTAACGTGGCTACAGGAGCCCTTGTGTCCGGTATGGGGTCGTACC 537 consensus_5148#1 TTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGT-TGGGGTCGTACC 531 ************************* ****************** ************ consensus_5148#0 GAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCG 597 consensus_5148#1 GAGTTCTCCAACCCC-AGTTCCCGGA---------------------------------- 556 *************** ********** consensus_5148#0 CAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACC 657 consensus_5148#1 ------------------------------------------------------------ consensus_5148#0 ATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTG 717 consensus_5148#1 ------------------------------------------------------------ consensus_5148#0 ATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTAT 777 consensus_5148#1 ------------------------------------------------------------ consensus_5148#0 CCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC 830 consensus_5148#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||