These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATGTGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCGATCTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAACGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATGTNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACACTACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGGTGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAACCGCACGCACACATGTCAGAATCCGATATTGGNGGTCCCGAACCAAAGATAACAATTTCCCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCTCCGGGACAAGGAGTGAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTGGNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAAGTGCCTTTACACNANGGACGNAACTTC] [+] EMBL AL695582 [CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATGTGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCGATCTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAACGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATGTNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACACTACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGGTGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAACCGCACGCACACATGTCAGAATCCGATATTGGNGGTCCCGAACCAAAGATAACAATTTCCCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCTCCGGGACAAGGAGTGAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTGGNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAAGTGCCTTTACACNANGGACGNAACTTC] consensusID : consensus_5150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CAGAATCGCCCGAGGTNTAAGTTGTTGCGGAAGAGTCGGAACGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCTCGGCTGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTACGAGCAGGAGGATCTCAACGTGGACGATGTGATGGTACTGGATGGTGGCGACGAAATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAGGAACGCAGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCTTCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATGTCATACGAAGCGTACCGGCAGCAGGCTTGGAGCAAAACCAGCATGCTGCGTTAGATACGCATCGACCATTTCATCCACTATCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG] [+] EMBL AL694248 [CAGAATCGCCCGAGGTNTAAGTTGTTGCGGAAGAGTCGGAACGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCTCGGCTGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTACGAGCAGGAGGATCTCAACGTGGACGATGTGATGGTACTGGATGGTGGCGACGAAATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAGGAACGCAGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCTTCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATGTCATACGAAGCGTACCGGCAGCAGGCTTGGAGCAAAACCAGCATGCTGCGTTAGATACGCATCGACCATTTCATCCACTATCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG] consensusID : consensus_5150#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [GAAGACGGCGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAACTGGAGAAGGATATGGCGGCCAACATTGCCGGGGTGGTTGCGCCCGACGCAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCCCGGCGGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACTGGATGGTGGCGACGAGATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAAGAACGCAGCAAGTCGAACGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACG] [+] EMBL BX608320 [GAAGACGGCGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAACTGGAGAAGGATATGGCGGCCAACATTGCCGGGGTGGTTGCGCCCGACGCAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCCCGGCGGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACTGGATGGTGGCGACGAGATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAAGAAC ] [+] EMBL BX612197 [ AACAAGAAGCCGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACCGGATGGTGGCGACGAGATCCACCGCCGGATCGGTAACGGTGCAACCGAGGAAGAACGCAGCAAGTCGAACGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5150#0 CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATG 60 consensus_5150#2 ------------------------------------------------------------ consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 TGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTC-GAT 119 consensus_5150#2 ----------GAAGACGGC-GGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAA 49 consensus_5150#1 ------------------------------------------------------------ consensus_5150#0 CTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTG 179 consensus_5150#2 CTGGAGAAGGATATGG--CGGCCAACATTGCCGGG---GTGGTTGCGCCCGACGCAAGTG 104 consensus_5150#1 ---------------------------------------CAGAATCGCCCGAGGTNT--- 18 ******* * consensus_5150#0 CCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAAC 239 consensus_5150#2 CCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAA-- 162 consensus_5150#1 ---AAGTTGTTGCGGAAGAGTCGGAAC-GGAGGAGTTCTGGGCAGCGCTCGGTGGAAA-- 72 ************************ ****************************** consensus_5150#0 GGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATG 299 consensus_5150#2 GGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCT-GACGCCCCGGC--G 219 consensus_5150#1 GGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCT-GACGCCTCGGC-TG 130 ************ ******************************** ****** **** * consensus_5150#0 TNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACAC 359 consensus_5150#2 GTTCCAC-TGTCGCATTCT-GTACAACAAG-AAGCTGC-GCGTCGAGGAA-GTGCCACAC 274 consensus_5150#1 TT-CCAC-TGTCGCATTCT-GTACAACAAG-AAGCTGC-GCGTCGAGGAA-GTGCCACAC 184 **** *********** ********** ******* *********** ********* consensus_5150#0 TACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGG 419 consensus_5150#2 TTCGAGCAGGAGG-AACTCAACGTGG--ACGAAGTGATGGTAC--------TGGA--TGG 321 consensus_5150#1 TACGAGCAGGAGG-ATCTCAACGTGG--ACGATGTGATGGTAC--------TGGA--TGG 231 * *********** * ********** *** ** * * * **** *** consensus_5150#0 TGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAAC 479 consensus_5150#2 TGGCGACG---AGATCTACT--GCTGG-ATCGGTAA-CGGTGCAACC-GAGGAAGAACGC 373 consensus_5150#1 TGGCGACG---AAATCTACT--GCTGG-ATCGGTAA-CGGTGCAACC-GAGGAGGAACGC 283 ******** * ***** ***** ******** ********** ** ** * * * consensus_5150#0 CGCACGCACA---------CATGTCAGAAT-CCGATATTGGNGGTCCCGAAC---CAAAG 526 consensus_5150#2 AGCAAGT-CG---------AACGATATGGC-CCGCCAGTACA---TCCGTAC---CGATC 416 consensus_5150#1 AGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAG 343 *** * * * * * *** * * consensus_5150#0 ATAACAATTTC--CCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCT 584 consensus_5150#2 CGTCCGAGCGG--TCGGAGGAGACG----------------------------------- 439 consensus_5150#1 GAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCT 403 * * * consensus_5150#0 CC-------GGGACAAGGAGT----GAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTG 633 consensus_5150#2 ------------------------------------------------------------ consensus_5150#1 TCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATG-TCATACGAAGCGTACCGGCAG 462 consensus_5150#0 GNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAA 693 consensus_5150#2 ------------------------------------------------------------ consensus_5150#1 CAGGCTTGGAGCAAAACCAGCATGCTGCGTTAG-ATACGCATCGACCATTTCATCCACTA 521 consensus_5150#0 GTGCCTTTACACNANGGACGNAACTTC---------- 720 consensus_5150#2 ------------------------------------- consensus_5150#1 TCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG 558 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||