These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 554 fasta sequence [CCGCGGACGCGTGGGTGACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACACCTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACGGTTAAATATATGGCCTTTACAAAG] [+] EMBL BM589590 [CCGCGGACGCGTGGGTGACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCATTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTAAATTACATCCCGATCAGCAGCTTTACTCATGCCGTCGATCAGAGGGAATTTAAGTACTACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGTACGGAGGTGCTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAAATGGCGACACCGAATCTGTTGTCCCCGTTTCGACCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACACCCGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACGGTTAAATATATGGCCTTTACAAAG] [+] EMBL BX619672 [ ACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTANCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACCACTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCG ] [+] EMBL BX620681 [ GCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACA CTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACG ] consensusID : consensus_5151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAAATACATTTTTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGNAACAGTTTAACACGCTTTGGATACAATGGTACATTGAATTAATCCCGATCAGCAGTTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGTATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCACGGAGTGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTGGCACCGACAATCAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAAACACAGAACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT] [+] EMBL AL694274 [GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAAATACATTTTTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGNAACAGTTTAACACGCTTTGGATACAATGGTACATTGAATTAATCCCGATCAGCAGTTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGTATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCACGGAGTGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTGGCACCGACAATCAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAAACACAGAACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5151#0 --------------------------------------------------------CCGC 4 consensus_5151#1 GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGT 60 ** consensus_5151#0 GGACGCGT---GGGTGACAGGAT--GATCGCCCCCAGTGCTGTAGTG-CTACTTCTAGCA 58 consensus_5151#1 TGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAA 120 ** *** * *** * * *** * * **** ** *** * * consensus_5151#0 ATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGC 118 consensus_5151#1 ATACATTT--TTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGN 178 ** *** **** ** * * * * ** * ** ************** consensus_5151#0 AAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGC 178 consensus_5151#1 AA-CAGTTTAACACG--CTTTGGATACAATGGTACATTGAATTA-ATCCCGATCAGCAG- 233 ** *********** *************************** ************** consensus_5151#0 TTTACTAATGCCGTCG-ATCA-GAGG-GAATTTAAGT---AATACGTGTTTGGAGTGT-- 230 consensus_5151#1 TTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGT 293 **************** **** **** ******* * ******** * ** consensus_5151#0 -TGGGACCGACTGGTGCA-GTCATTCGGCTTTCCCATTCAG-TGTATCCTTAC--GGCAC 285 consensus_5151#1 ATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCAC 353 **************** ********************** *********** ***** consensus_5151#0 GGAGGTGGTAGAAGTGGTACTGGG-AGCC-TATAACAACACGAAAACGATTGCCCGACAT 343 consensus_5151#1 GGAG-TGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTG----GCAC 408 **** ****** ************ **** ********************** ** consensus_5151#0 CAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCG 403 consensus_5151#1 CGACAAT-CAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAA-----ACACAG 462 * ** **** ** *** * ** * ** ** **** * **** * consensus_5151#0 AATCT-GTTGTCCCCGTTTCGTCC---TGTGATGTTAATGCTTAAAGTGTGGACGAACGG 459 consensus_5151#1 AACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT 522 ** * * ** * * ** * * ** * ** * ** * * * * consensus_5151#0 CAGGCGAGAAGTGTTGCACACCTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCC 519 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 GAAACATCACGGTTAAATATATGGCCTTTACAAAG 554 consensus_5151#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||