These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 977 fasta sequence [TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTTTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCCCT-GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTTTCTTTCCCAACGTTTGGCAGCTAAAAAA] [+] EMBL CNS09NIY [TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTTTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCCCT GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTT ] [-] EMBL CNS09NIX [ TTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTTGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTGTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTGATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCACTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTCTTTCTTTCCCAACGTTTGGCAGCTAAAAAA] consensusID : consensus_5153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CAGCTCGGGCACATGTGGCCTTTTTTTTTATTTTTTTTTTTCGCCATTAAACTA-TATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTCAACCTGCATCGATACACGCGATACATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTGTGTTGCATAATTGCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGCATTCTGACTCTACCCTTCGTCGCGGACGCGT-TACTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTC-TTCTTCCCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC] [-] EMBL CNS08LMC [CAGCTCGGGCACATGTGGCCTTTTTTTTTATTTTTTTTTTTCGCCATTAAACTA TATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTCAACCTGCATCGATACACGCGATACATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTGTGTTGCATAATTGCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGCATTCTGACTCTACCCTTCGTCGCGGACGCGT TACTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTC TTCTTC ] [+] EMBL CNS08LMD [ TTTTTTTTTTCGCCATTTTACTATTATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGAAAAACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTAAACCTGCATCGATACACGCGATAAATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTTTTTTGCATAATTGCCAAAC CGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTGGCATTCTGACTCTACCCTTCGTCGCGGACGCGTACGCTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACAAAAAACAATAATTAATGATGCCCT GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTTCTCTTTCTTTCCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5153#0 TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTT 60 consensus_5153#1 ------------------------------------------------------------ consensus_5153#0 ATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATAT 120 consensus_5153#1 ------------------------------------------------------------ consensus_5153#0 AGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATA 180 consensus_5153#1 ------------------------------------------------------------ consensus_5153#0 ACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATA 240 consensus_5153#1 ------------------------------------------------------------ consensus_5153#0 GTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCT 300 consensus_5153#1 ---------------------------------CAGCTCGGGCACA---TGTGGCCTTTT 24 * * * * ** ** * *** * consensus_5153#0 GTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTG 360 consensus_5153#1 TTTTTATTTTTTTTTTTCGCCATTAAACTATATTTTACA---TAAATAACACAAACGTAT 81 * *** ** * * * *** * * * * ** * * * consensus_5153#0 CAGTGAGTCATTGTGTGTAAC-TTCTGTTGCCTTTCTTTG-CAGGTCTATGCAACAAGTG 418 consensus_5153#1 AAATCA-CAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATT 140 * * * * **** ** * ** * ** * * * * * consensus_5153#0 CACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCT 478 consensus_5153#1 TAAAAATT-TAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATA 199 * ***** * * * * * ** * * * ** * **** consensus_5153#0 TTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCA 538 consensus_5153#1 TCCATGCACAAT-----CACGCGTAAAGGTTAACCAACGACCCCTGTAA---------CC 245 * * ** ** * * * * * ** *** * *** ** ** * consensus_5153#0 TTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTC 598 consensus_5153#1 TTGTGCCCTACATCGCATCTGTCAACCTGCATCG-----ATACACGCGAT-ACATCCTTC 299 ** * * ** *** ** *** * * * *** ** * ** ** consensus_5153#0 GTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTT 658 consensus_5153#1 GT--GGTGTTGGTTACAG--GCCGTC-CGACAGCAAAGAGTGTGTGTTGCATAA----TT 350 ** * * *** ** * * ***** * * * ** * ** consensus_5153#0 CCCAGATTCTTCTCTCCGCATGACCGCTGAT--AACCGCCGAGCGAGTTTGGC-TGGTCC 715 consensus_5153#1 GCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGC 410 *** * ** ** * * * * * * * *** **** ** * ** * * consensus_5153#0 GTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACG 775 consensus_5153#1 ATTCTGACTCTACCCTTCGTCGCGGACGCGTTACTTCGCGGTAAATCTGTCCTGGGATCT 470 * * * * * * * * ** * * * ** * * consensus_5153#0 CCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGAC 835 consensus_5153#1 CGTGGCCGGTGTTGTTGCTCAA--GCCCGACGCACTTTTTTTGCGAACCACACTCTAGAC 528 * * ** *** **** * * ** * *************************** consensus_5153#0 AAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAAT 895 consensus_5153#1 AAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAAT 588 ************************************************************ consensus_5153#0 GATGCCCTGCT-TCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTTTCTTT 954 consensus_5153#1 GATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTCTT-CTTC 647 ***** ** ********************************* *** ***** *** consensus_5153#0 CCCAACGTTTGGCAGCTAAAAAA-------------------------- 977 consensus_5153#1 CCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC 696 **************** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||