These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1235 fasta sequence [CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATACGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGCCCGCACGTACTGCCTCCGATGCGACCTGTACAGCCGTTCCTGTGCGCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTGTGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAACGGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTGGATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGCGAATACCAAGCTGTCAAAA] [+] EMBL BM631869 [CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACA ] [+] EMBL BX625572 [ CGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATACGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGCCCGCACGTACTGCCTCCGATGCGACCTGTACAGCCGTTCCTGTGCGCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTGTGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAACGGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTGGATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGCGAATACCAAGCTGTCAAAA] consensusID : consensus_5154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAACTGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCCCGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG] [+] EMBL BM648486 [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAACTGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCCCGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG] consensusID : consensus_5154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCCCAGGATTAGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGGCCGACGTTACTGGCTCCGATGCGA] [+] EMBL AL694294 [CCCCAGGATTAGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGGCCGACGTTACTGGCTCCGATGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5154#0 CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAA 60 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 GTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGA 120 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 CGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGC 180 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 AGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCC 240 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 TACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATG 300 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 CCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGA 360 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 ACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGC--GCTGGAGGGA 418 consensus_5154#2 -------------CCCCAGGATTA-GTTTGCTGCGAAAAACGCTCCGC--GCTGGAGGGA 44 consensus_5154#1 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAAC 45 ** ** ** ** * *** *** ** consensus_5154#0 C-CACGGACGACCACTGGCAAGCCTACGAGTGATGC-AACGTGTGGGTTCCGCAGCAGGA 476 consensus_5154#2 C-CACGGACGACCACTGGCAAGCCTACGAGTGATGC-AAAGTGTGGGTTCCGCAGCAGGA 102 consensus_5154#1 TGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCA-----A 100 * *** * * * ** ** * *** * * *** ** ** * consensus_5154#0 AACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAG-GAGCTGGA-CGATCCTACAAA 534 consensus_5154#2 AACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAG-GAGCTGGA-CGATCCTACAAA 160 consensus_5154#1 GTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAA 160 *** * * * ** **** * * ** ** * ** * *** consensus_5154#0 CCAGC---TGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGT 591 consensus_5154#2 CCAGC---TGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGT 217 consensus_5154#1 ACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTT 220 ** ** ** * ** * ** * * * * * * * * ** * * consensus_5154#0 GGCCCATTGCG-TGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCG--CCGGCGAATG 648 consensus_5154#2 GGCCCATTGCG-TGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCG--CCGGCGAATG 274 consensus_5154#1 CACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACA 280 * *** ** * ***** ** * * ** ** ** ** * **** consensus_5154#0 GCGCCTA-GAAACGGAACATCAGA--ACCGCCGGGTGGCCCAGCTC----ATCACACGCA 701 consensus_5154#2 GCGCCTA-GAAACGGAACATCAGA--ACCGCCGGGTGGCCCAGCTC----ATCACACGCA 327 consensus_5154#1 ACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAA 340 * * * **** ****** * * *** * ** ** * * consensus_5154#0 AAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTC---TCCGAA- 757 consensus_5154#2 AAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTC---TCCGAA- 383 consensus_5154#1 CAAGATCGTACCGCCCATGTTGGGTAAACGGT-TCGTCCCGGACGACAGCGAACCCGAAT 399 * *** ** * * ** **** * *** ** * ** * ***** consensus_5154#0 --CCGTTCCAGCTG-ACGGAAACCAT-ACAACCGATCTGTCTC-------CCACCGAAGG 806 consensus_5154#2 --CCGTTCCAGCTG-ACGGAAACCAT-ACAACCGATCTGTCTC-------CCACCGAAGG 432 consensus_5154#1 GCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGA 459 **** ** * *** * * ** ** ** * **** ** * consensus_5154#0 GAAC-----ATCCTTCGATCGAAGCGAT-TGCTTCACGGTCGGCTGGGACAGAATAATCG 860 consensus_5154#2 GAAC-----ATCCTTCGATCGAAGCGAT-TGCTTCACGGTCGGCTGGGACAGAATAATCG 486 consensus_5154#1 CCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCC 519 ** * *** *** ** ** * ** * ** ** * ** * * ** consensus_5154#0 TCTGCGATGGATA--CGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCC 918 consensus_5154#2 TCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCC 546 consensus_5154#1 CGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACC 579 ** * * ** * ** ** * * *** *** * ** consensus_5154#0 -GCATGACGTTTGCCCGCACGTACTGC-CTCCGATGCGACCTGTACAGCCGTTCCTGTGC 976 consensus_5154#2 -GCATGACGTTTGGCCGACGTTACTGG-CTCCGATGCGA--------------------- 583 consensus_5154#1 AGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG--------------- 624 * ** ** ** * ** * * * consensus_5154#0 GCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTG 1036 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 TGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAAC 1096 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 GGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTG 1156 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 GATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGC 1216 consensus_5154#2 ------------------------------------------------------------ consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 GAATACCAAGCTGTCAAAA 1235 consensus_5154#2 ------------------- consensus_5154#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||