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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACAATGCGTTGCTGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGAAATATTCGGAAGAAAAATAAAAT]
[+] EMBL BM637724 [CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTT ]
[+] EMBL BM623231 [ ccgCAAATACCAAATTGTGTACCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCGGTCAGCTGAACGATCTCGGAGAACATACGGCCAAATCGATTCTAGGCGAAGAAATACCGGAGGCTGAGATTAGCAAAATATATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCATGTTTACGGTTTCTGCTCACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACA ]
[+] EMBL BX615142 [ CTTACACACTTCCCAACTTCCGGTGCGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGCTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGTAACGATGCGTTGCTGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGAAATATTCGGAAGAAAAATAAAAT]
consensusID : consensus_5158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[CCCCCGAGGTTAATACAAATGTGTACCCGGTGCGCGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGG]
[+] EMBL AL694382 [CCCCCGAGGTTAATACAAATGTGTACCCGGTGCGCGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5158#0 ---CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGAT 57
consensus_5158#1 CCCCCGAGGTTAATA-----CAAAT-GTGTACCCGGTGCGCGATAAAAAAGGAAGGTGAT 54
**** * ** * ***** **** ********* *******************
consensus_5158#0 CGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGC 117
consensus_5158#1 CGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGC 114
**************************** *******************************
consensus_5158#0 TTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCG 177
consensus_5158#1 TTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCG 174
************************************************************
consensus_5158#0 AAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATA 237
consensus_5158#1 AAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATA 234
************************************************************
consensus_5158#0 CGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCA 297
consensus_5158#1 CGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCA 294
************************************ ***********************
consensus_5158#0 TCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTA 357
consensus_5158#1 TCACTAAAGGTTCCATGGACGGGCCGAAGG------------------------------ 324
******************************
consensus_5158#0 CCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCG 417
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 GATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGA 477
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 TACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCA 537
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 GCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAG 597
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 TGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACAATGCGTTGC 657
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 TGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGA 717
consensus_5158#1 ------------------------------------------------------------
consensus_5158#0 AATATTCGGAAGAAAAATAAAAT 740
consensus_5158#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||