These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [GCACCATGGATCGCGAGCTCGCAACGACACTGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGACTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCTACAACTTCATCAACGGGCTGGAGGTGCTGCACCTGATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTTCATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT] [+] EMBL BX612531 [GCACCATGGATCGCGAGCTCGCAACGACACTGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGACTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCTACAACTTCATCAACGGGCTGGAGGTGCTGCACCTGATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTTCATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT] consensusID : consensus_5160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGGACGTTTGGCTCGCGTAGCTGCTGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCCTTTAATTAACGATGGATCTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCATCCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTTCGCTAATACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGATTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCT] [+] EMBL BM622305 [CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGGACGTTTGGCTCGCGTAGCTGCTGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCCTTTAATTAACGATGGATCTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCATCCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTTCGCTAATACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGATTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCT] consensusID : consensus_5160#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GCAGATCCCCGAGGTTNATCCGTATNAGCCGCTAAGCGTTACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAGCGATGGAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACTGCACAACGTGCTGCACGAGCTGTCCTCCAAGTNGTACCGAATCTGACGCACATGCTGCATCGATTACTCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANATGCAAGCCTNCCCGGCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCTGATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC] [+] EMBL AL694439 [GCAGATCCCCGAGGTTNATCCGTATNAGCCGCTAAGCGTTACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAGCGATGGAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACTGCACAACGTGCTGCACGAGCTGTCCTCCAAGTNGTACCGAATCTGACGCACATGCTGCATCGATTACTCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANATGCAAGCCTNCCCGGCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCTGATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC] consensusID : consensus_5160#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTGAGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCGTATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCTCCCAGCTTTTCTTTGGCTCTAGTGATGGAACGTCCATCGAANAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAAACGCAGCTGTGGAACGAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAGCTGGCAGTCATCTCGGTGCGGTTCGGACCGTCGCTNGCGCTACATCGAGCTGCCGATCGAGCTCGATCACGCACACCGTGCTGCACGAGNCTGTACTCCAAGTGTCCGAATCTGACGCACATGCTGCCTCGACTANCTCGACGGTATGCAGCTGCACGACTTTAGCGNAATGNNAGCCTTACCGG] [+] EMBL AL695829 [CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTGAGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCGTATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCTCCCAGCTTTTCTTTGGCTCTAGTGATGGAACGTCCATCGAANAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAAACGCAGCTGTGGAACGAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAGCTGGCAGTCATCTCGGTGCGGTTCGGACCGTCGCTNGCGCTACATCGAGCTGCCGATCGAGCTCGATCACGCACACCGTGCTGCACGAGNCTGTACTCCAAGTGTCCGAATCTGACGCACATGCTGCCTCGACTANCTCGACGGTATGCAGCTGCACGACTTTAGCGNAATGNNAGCCTTACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5160#2 ------------------------------------------------------------ consensus_5160#3 CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTG 60 consensus_5160#0 ------------------------------------------------------------ consensus_5160#1 --CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGG-ACGTTTGGCTCGCGTAGCTGC 57 consensus_5160#2 --------------------------------------GCAGATCCCCGAGGTTNATCCG 22 consensus_5160#3 AGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCG 120 consensus_5160#0 ------------------------------------------------------------ consensus_5160#1 TGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCC 117 consensus_5160#2 TATNAGCCGCTAAGCGTTA-CGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGT 81 consensus_5160#3 TATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGT 180 consensus_5160#0 ------------------------------GCACCATGGATCGCGAGCTCGCAACGACAC 30 consensus_5160#1 TTTAATTAACGATGGAT---CTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCAT 174 * ** * consensus_5160#2 TCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAG---CGATGGAACGTCCATCGAAA 138 consensus_5160#3 TCAGGAAACGACC-TCCCAGCTTTTCTTTGGCTCTAG---TGATGGAACGTCCATCGAAN 236 consensus_5160#0 TGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAA 90 consensus_5160#1 CCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTT---CGCTAATACGTCCATCGAAA 231 * ** * ** * ************ consensus_5160#2 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 197 consensus_5160#3 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGT 296 consensus_5160#0 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 149 consensus_5160#1 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 290 ************************************* ************** ******* consensus_5160#2 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAA- 256 consensus_5160#3 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAA-ACGCAGCTGTGGAAC 355 consensus_5160#0 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAA- 208 consensus_5160#1 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAA- 349 *********************************** ****** ************** consensus_5160#2 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 314 consensus_5160#3 GAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAG 415 consensus_5160#0 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 266 consensus_5160#1 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 407 ******** ************************************************* * consensus_5160#2 CTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCG 374 consensus_5160#3 CTGGCAGTCATCTCGGTGCGGTTCGGACCGT-CGCTNGCGCTACATCGAGCTGCCGATCG 474 consensus_5160#0 CTGCAGCTCATCTCGGTGCGGTTCGGACCGT--CGCTGCGCTACATCGAGCTGCCGATCG 324 consensus_5160#1 CTGCAGCTCATCTCGGTGCGGTTCGGACCGT--CGCTGCGCTACATCGAGCTGCCGATCG 465 *** ************************ *********************** consensus_5160#2 AGCT-GATCACTGCACAACGTGCTGCACGAGC-TGTCCTCCAAGTNGTACCGAATCTGAC 432 consensus_5160#3 AGCTCGATCAC-GCACACCGTGCTGCACGAGNCTGTACTCCAAGTGT--CCGAATCTGAC 531 consensus_5160#0 AGCT-GATCAC-GCACACCGTGCTGCACGAGC-TGTCCTCCAAGTGT--CCGAATCTGAC 379 consensus_5160#1 AGCT-GATCAC-GCACACCGTGCTGCACGAGC-TGTCCTCCAAGTGT--CCGAATCTGAC 520 **** ****** ***** ************* *** ******** *********** consensus_5160#2 GCACATGCTGCATCGATTAC-TCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANAT 491 consensus_5160#3 GCACATGCTGCCTCGACTANCTCGACGG--TATGCAGCTGCACGACT-TTAGC--GNAAT 586 consensus_5160#0 GCACATGCTGC-TCGACTTC-TCGACGGC-TATGCAGCTGCACGACT-TTAGC--GAAAT 433 consensus_5160#1 GCACATGCTGC-TCGATTTC-TCGACGGC-TATGCAGCTGCACGACT-TTAGC--GAAAT 574 *********** **** * ******* *************** * ***** ** consensus_5160#2 GCAAGCCTNCCCGGC-AAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 550 consensus_5160#3 GNNAGCCTTACCGG---------------------------------------------- 600 consensus_5160#0 GCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 493 consensus_5160#1 GCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 634 * ***** **** consensus_5160#2 GGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCT 610 consensus_5160#3 ------------------------------------------------------------ consensus_5160#0 GGAGGGCTTCATGCGCA-AGATCTACAACTTCATCAAC--GGGCTGGAGGTGCTGCACCT 550 consensus_5160#1 GGAGGGCTTCATGCGCA-AGATCT------------------------------------ 657 consensus_5160#2 GATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC---------------- 654 consensus_5160#3 ------------------------------------------------------------ consensus_5160#0 GATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGT 610 consensus_5160#1 ------------------------------------------------------------ consensus_5160#2 ------------------------------------------------------------ consensus_5160#3 ------------------------------------------------------------ consensus_5160#0 GCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTT 670 consensus_5160#1 ------------------------------------------------------------ consensus_5160#2 ------------------------------------------------------- consensus_5160#3 ------------------------------------------------------- consensus_5160#0 CATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT 725 consensus_5160#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||