These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1238 fasta sequence [CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTTTGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCACTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACAAAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCCATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCTCGCACATTTCCAACGTGCAATCGACTTAGTGTGACAATAGAGTCGGGATAGTGTGCTGAGCGCTTGCAAGCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGAAGTATTTATAGTAAACACATTACACATTACACTTACNACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACCAAACGATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATATAGCGCAAATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATACACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGTTCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTGTTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAGTAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATGTATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAATGTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATTATGCTGTTTAGGTT] [+] EMBL BX627000 [CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTTTGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCACTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACAAAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCCATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCTCGCACATTTCCAACGTGCAATCGACTTAGTGTGACAATAGAGTCGGGATAGTGTGCTGAGCGCTTGCAAGCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGAAGTATTTATAGTAAACACATTACACATTACACTTACNACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACCAAACGATATGCACT ] [+] EMBL BM597288 [ ccgACACATTACACTTACAACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACAAAACGATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATATAGCGCAAATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATACACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGTTCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTGTTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAGTAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATGTATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAATGTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATTATGCTGTTTAGGTT] consensusID : consensus_5162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CGAGGTTATTTCGTTGGCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGGATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAACATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACCCCTATATTCCATTAACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAAACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAATTTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTGAATTGTTG] [+] EMBL AL694482 [CGAGGTTATTTCGTTGGCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGGATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAACATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACCCCTATATTCCATTAACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAAACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAATTTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTGAATTGTTG] consensusID : consensus_5162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GATCGCCCGAGGTNACTTAGTGTGACAAGAGTCGGGATAGTGCGCTGAGCGCTGCAAGCCAAAATCTCGGTTACATTCTCTTAACCGCCAAGAGAGAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGAAGTATTTATAGTAAACACATTACAAATTACACTTAGAACGGCCGATATTTGCGGAAAGCATGATAAATGATGGTTTGAAATTCGATTCATCTCACTACTACTACTACTACAAAACCATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAAATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA] [+] EMBL AL930421 [GATCGCCCGAGGTNACTTAGTGTGACAAGAGTCGGGATAGTGCGCTGAGCGCTGCAAGCCAAAATCTCGGTTACATTCTCTTAACCGCCAAGAGAGAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGAAGTATTTATAGTAAACACATTACAAATTACACTTAGAACGGCCGATATTTGCGGAAAGCATGATAAATGATGGTTTGAAATTCGATTCATCTCACTACTACTACTACTACAAAACCATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAAATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5162#0 CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTA 60 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 GAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTT 120 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 TGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGG 180 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 GCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCA 240 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 CTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACA 300 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 AAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCC 360 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 ATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCT 420 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 --------------------------------------------CGAGGTTATTTCGTTG 16 consensus_5162#0 CGCACATTTCCAACGTGCAAT-CGACTTAGT-GTGACAATAGAGTCGGGATAG----TGT 474 consensus_5162#2 ----------GATCGCCCGAGGTNACTTAGT-GTGACAA--GAGTCGGGATAG----TGC 43 consensus_5162#1 GCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGG 76 * * ** * * ** * * * * * * * ** consensus_5162#0 GCTGAGCGCTTGCAA-GCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAG 533 consensus_5162#2 GCTGAGCGCT-GCAA-GCCAAAATCTCGGTTACATTCTCTTAACCGCCA-AGAGAGAGAG 100 consensus_5162#1 ATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAG 136 * * * ** * * * * * ** ** consensus_5162#0 CAGCCTAAA--TCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGA 591 consensus_5162#2 CAGCCTAAA--TCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGA 158 consensus_5162#1 CCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAAC 196 * * ** * * * * * * ** * * ** * *** * * * * consensus_5162#0 AGTATTTAT--AGTAAACACATTA----CACATTACACTTACNACGGCCGATATTTG--- 642 consensus_5162#2 AGTATTTAT--AGTAAACACATTA----CAAATTACACTTAGAACGGCCGATATTTG--- 209 consensus_5162#1 ATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACC--CCTATATTCCATT 254 * ** * * * ** ** ** ** ***** ** * ** ***** consensus_5162#0 ---CGGAGAGCATTAT-AAATGATCGTTTGAAATTCGATTCATCTCACTACTACGA--CT 696 consensus_5162#2 ---CGGAAAGCATGAT-AAATGATGGTTTGAAATTCGATTCATCTCACTACTACTA--CT 263 consensus_5162#1 AACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTT 314 **** * ** * * **** *** * ** * ** * * consensus_5162#0 ACCA---AACG--ATATGCACTACTTACTA--GAGGGGTTGACTTCTTACCAA--ACTGG 747 consensus_5162#2 ACTACAAAACC--ATATGCACTACTTACTA--GAGGGGTTGACTTCTTACCAA--ACTGG 317 consensus_5162#1 AAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAA 374 * * ** * * ** ** * ** * ** * * * * *** consensus_5162#0 GGAC--TCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATA-TAGCGCAA 804 consensus_5162#2 GGAC--TCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAA 375 consensus_5162#1 ACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAAT 434 ** * **** *** * * * * * * ** * * * * consensus_5162#0 ATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATA 864 consensus_5162#2 ATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA------ 429 consensus_5162#1 TTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTG 494 ** ** *** * * * * * ** *** ** *** * * consensus_5162#0 CACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGT 924 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 AATTGTTG---------------------------------------------------- 502 consensus_5162#0 TCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTG 984 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 TTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAG 1044 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 TAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATG 1104 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 TATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAAT 1164 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 GTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATT 1224 consensus_5162#2 ------------------------------------------------------------ consensus_5162#1 ------------------------------------------------------------ consensus_5162#0 ATGCTGTTTAGGTT 1238 consensus_5162#2 -------------- consensus_5162#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||