These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence [CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA-TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG-AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG] [+] EMBL BM653368 [CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGC ] [+] EMBL AL694489 [ cccgaggttAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAACTGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGA CGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG] consensusID : consensus_5163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC] [+] EMBL BM614913 [CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC] consensusID : consensus_5163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA] [+] EMBL AL930335 [GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5163#0 CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCA 60 consensus_5163#1 ------------------------------------------------------------ consensus_5163#2 ------------------------------------------------------------ consensus_5163#0 AACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGG 120 consensus_5163#1 --CCGCGGACGCGTGGGCGGA-CGCGTGGGCATTAT-TAAGCTTACGGGCAGTGTTGGGG 56 consensus_5163#2 ----------------------------------------------------------GC 2 * consensus_5163#0 GAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAG 180 consensus_5163#1 AAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAG 116 consensus_5163#2 AGATCGCCCCGAGGTTCACTCAGCTAAG--CGATAGTAGCGAATTCAGTAGCGAATGGTG 60 * * * * * ** ** ** *** * * *** ** * * consensus_5163#0 AAGAAGACAAAAAAAA-CCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 239 consensus_5163#1 AAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 176 consensus_5163#2 GTGAATATGCAGTTTGTTTTTAACAAACGGTTTCT----------TGACCATTTC-ACAA 109 *** * * * * ** * * ** * * * *** ** * consensus_5163#0 ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAATGATTAAATTGCCATTTGAAC 298 consensus_5163#1 ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAACGATTAAATTGCCATTTAAAC 235 consensus_5163#2 CCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAAT 169 * * ** ** ** * * * * *** * *** * * ** consensus_5163#0 CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCC 358 consensus_5163#1 CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCC 295 consensus_5163#2 TA-ATAATCAGATCA-----AAGAAAC-------GTTTTAAAACACGGCCATGTGTCGCC 216 * ** **** * ** ****** * * ** * ** * * * ** consensus_5163#0 CA-TTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTA 417 consensus_5163#1 CCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTA 355 consensus_5163#2 GCATGTTTCCGCAA--ATTCTCATCATTTTAAGCTCATCTTTACCAC-ATCTTTCTAAAG 273 * ***** ** **** * * * * ** ** * *** * consensus_5163#0 ATACATTAAATGGGCAG-ATGAAAAAAGA--AACGGGCGTAACAGTTAATGGCGAATGTT 474 consensus_5163#1 ATACATTAAATGGGCAG-ATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTT 414 consensus_5163#2 GTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTG-CAAACATT 332 * * *** ** *** * * ** * * * * ** * ** ** consensus_5163#0 TTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 534 consensus_5163#1 TCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 474 consensus_5163#2 TTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACG 392 * * * * * * ** * * * * * *** consensus_5163#0 CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 593 consensus_5163#1 CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 533 consensus_5163#2 CGCGTGCACACA----TGCAATGTCACAAC-AGTCANAGAAACAAAACAAAAGCAAAGCA 447 * * * *** ** ** * *** * *** * * ** * consensus_5163#0 ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAA-TTCCA 651 consensus_5163#1 ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCA 592 consensus_5163#2 ACACACACAAAGCAACAACAGTCACCAAAC--ATTGTGAGAAAAAGCTGTGACGATCACG 505 * * * **** * *** * * ** * ** * *** ** * * consensus_5163#0 ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 708 consensus_5163#1 ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 649 consensus_5163#2 GCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAAC 565 * * * * * * * ** *** * ** *** **** * * consensus_5163#0 AAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGA 768 consensus_5163#1 AAGCAAATTC-------------------------------------------------- 659 consensus_5163#2 AAGGCAAGGCATAGAAGGACAACAGCAA-------------------------------- 593 *** ** * consensus_5163#0 CCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAG 828 consensus_5163#1 ------------------------------------------------------------ consensus_5163#2 ------------------------------------------------------------ consensus_5163#0 GCACATGCACACATTCAATAATCAGATCAAAAGAAACG 866 consensus_5163#1 -------------------------------------- consensus_5163#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||