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Anopheles gambiae
cluster # 5163 cluster # 5163       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5163#0 length = 866 sequences # 2  
consensus_5163#1 length = 659 sequences # 1  
consensus_5163#2 length = 593 sequences # 1  

consensusID : consensus_5163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 866
fasta sequence
                              [CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA-TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG-AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG]

[+] EMBL BM653368             [CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGC                                                                                                                                                                    ]
[+] EMBL AL694489             [                                                                                                                                                                                                                                                                                                                        cccgaggttAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAACTGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGA CGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG]


>consensus_5163#0 CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCA AACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGG GAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAG AAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAA TAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCA CATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCA TTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATA CATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAATGTTTTCCGG CCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTA AAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCT TTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAATTCCAACAAGTGGA TGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAG TAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAAC CAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACAC ATTCAATAATCAGATCAAAAGAAACG



consensusID : consensus_5163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC]

[+] EMBL BM614913             [CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC]


>consensus_5163#1 CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAAC TGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGA AGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAG CTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACAT GATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTT CCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACA TTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGG CCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTA AAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCT TTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGG ATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC



consensusID : consensus_5163#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA]

[+] EMBL AL930335             [GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA]


>consensus_5163#2 GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTG GTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACA CACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGA TCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCA TTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACA AGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACA CGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAG TCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATT GTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAG GCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5163#0      CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCA 60
consensus_5163#1      ------------------------------------------------------------
consensus_5163#2      ------------------------------------------------------------
                                                                                  

consensus_5163#0      AACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGG 120
consensus_5163#1      --CCGCGGACGCGTGGGCGGA-CGCGTGGGCATTAT-TAAGCTTACGGGCAGTGTTGGGG 56
consensus_5163#2      ----------------------------------------------------------GC 2
                                                                                * 

consensus_5163#0      GAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAG 180
consensus_5163#1      AAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAG 116
consensus_5163#2      AGATCGCCCCGAGGTTCACTCAGCTAAG--CGATAGTAGCGAATTCAGTAGCGAATGGTG 60
                        *  *      * *  *   **  **   **  ***   *  * ***     ** *  *

consensus_5163#0      AAGAAGACAAAAAAAA-CCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 239
consensus_5163#1      AAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 176
consensus_5163#2      GTGAATATGCAGTTTGTTTTTAACAAACGGTTTCT----------TGACCATTTC-ACAA 109
                        *** *   *        * * **  *   * **          *  * * *** ** *

consensus_5163#0      ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAATGATTAAATTGCCATTTGAAC 298
consensus_5163#1      ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAACGATTAAATTGCCATTTAAAC 235
consensus_5163#2      CCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAAT 169
                        *     *   **     ** **   * * *  * ***  *  ***     * *  ** 

consensus_5163#0      CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCC 358
consensus_5163#1      CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCC 295
consensus_5163#2      TA-ATAATCAGATCA-----AAGAAAC-------GTTTTAAAACACGGCCATGTGTCGCC 216
                       * ** **** * **     ******         * *  ** * **   * * *   **

consensus_5163#0      CA-TTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTA 417
consensus_5163#1      CCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTA 355
consensus_5163#2      GCATGTTTCCGCAA--ATTCTCATCATTTTAAGCTCATCTTTACCAC-ATCTTTCTAAAG 273
                         *   *****    **    ****     *    * * * ** ** *  *** *    

consensus_5163#0      ATACATTAAATGGGCAG-ATGAAAAAAGA--AACGGGCGTAACAGTTAATGGCGAATGTT 474
consensus_5163#1      ATACATTAAATGGGCAG-ATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTT 414
consensus_5163#2      GTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTG-CAAACATT 332
                       *   * *** ** *** * * **  *     *        *    *  ** * **  **

consensus_5163#0      TTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 534
consensus_5163#1      TCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 474
consensus_5163#2      TTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACG 392
                      *       *  *  *    *   * ** *    *    *    *      *    ***  

consensus_5163#0      CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 593
consensus_5163#1      CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 533
consensus_5163#2      CGCGTGCACACA----TGCAATGTCACAAC-AGTCANAGAAACAAAACAAAAGCAAAGCA 447
                      *   *  *        *** ** **      * *** *  ***       * * ** *  

consensus_5163#0      ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAA-TTCCA 651
consensus_5163#1      ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCA 592
consensus_5163#2      ACACACACAAAGCAACAACAGTCACCAAAC--ATTGTGAGAAAAAGCTGTGACGATCACG 505
                      * *  *   ****   * ***  * * **   *  **   *  ***    **   *  * 

consensus_5163#0      ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 708
consensus_5163#1      ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 649
consensus_5163#2      GCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAAC 565
                       *    * *    *  *  *   *  **   *** *    **  ***   **** * *  

consensus_5163#0      AAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGA 768
consensus_5163#1      AAGCAAATTC-------------------------------------------------- 659
consensus_5163#2      AAGGCAAGGCATAGAAGGACAACAGCAA-------------------------------- 593
                      ***  **  *                                                  

consensus_5163#0      CCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAG 828
consensus_5163#1      ------------------------------------------------------------
consensus_5163#2      ------------------------------------------------------------
                                                                                  

consensus_5163#0      GCACATGCACACATTCAATAATCAGATCAAAAGAAACG 866
consensus_5163#1      --------------------------------------
consensus_5163#2      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)