These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTGCGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCCTGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTACGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCAAGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGGTTAACGAGGACGAACGGCCGCGGTTCTCGACG] [+] EMBL BM643362 [CCGCCCACGCGTCCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTGCGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCCTGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTACGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCAAGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGGTTAACGAGGACGAACGGCCGCGGTTCTCGACG] consensusID : consensus_5169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 685 fasta sequence [CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGAAAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC-CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG-AGGCCGAAAAGGAGCAGAAGGC-TGCGTCGC-GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGC] [+] EMBL AL694664 [CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGAAAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAATGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAACTGATGGAAACGTTGATCTGCGCAGAATGAAAGCGAAAATGGNAACCTGCAAGAGCTGCAGGAGAAAATCGCACAGCTGGAAGCCCGAAAAGGAGCAGAAGGCGTGCGTCGCGGTTCGCGATACGAAAAGGAACTGGAA ] [+] EMBL BM616882 [ ccgCACATATTGATACGCATCGGTCGTATTCTTTGGCGAAAACGAAGCCGTTATCAAACATTTTTGGCAGTCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTT AGC GTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG AGGCCGAAAAGGAGCAGAAGGC TGCGTCGC GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGG ] [+] EMBL BM614139 [ ccGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG AGGCCGAAAAGGAGCAGAAGGC TGCGTCGC GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5169#0 ------------------------------------------------------------ consensus_5169#1 CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGA 60 consensus_5169#0 ------------------------------------------------------------ consensus_5169#1 AAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATG 120 consensus_5169#0 ------------------------------------------------------------ consensus_5169#1 TGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAG 180 consensus_5169#0 ------------------------------------------------------------ consensus_5169#1 AGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAG 240 consensus_5169#0 CCGCCCACGCGT-----CCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCA 55 consensus_5169#1 TGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCA 300 * * ***** * ***************************************** consensus_5169#0 ACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTG 115 consensus_5169#1 ACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTG 360 ************************************************************ consensus_5169#0 CGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGG 175 consensus_5169#1 CGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGG 420 ************************************************************ consensus_5169#0 CGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAG 235 consensus_5169#1 CGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAG 480 ************************************************************ consensus_5169#0 GAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTG 295 consensus_5169#1 GAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTG 540 ************************************************************ consensus_5169#0 GCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGT 355 consensus_5169#1 GCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGT 600 ************************************************************ consensus_5169#0 TAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAG 415 consensus_5169#1 TAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAG 660 ************************************************************ consensus_5169#0 AGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCC 475 consensus_5169#1 AGATGGAACTGTGCGAGAAGATGGC----------------------------------- 685 ************************* consensus_5169#0 TGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTA 535 consensus_5169#1 ------------------------------------------------------------ consensus_5169#0 CGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCA 595 consensus_5169#1 ------------------------------------------------------------ consensus_5169#0 AGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGG 655 consensus_5169#1 ------------------------------------------------------------ consensus_5169#0 TTAACGAGGACGAACGGCCGCGGTTCTCGACG 687 consensus_5169#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||