|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1158 fasta sequence
[CCGGGGTGTGTAGATATTCAAAACACAGACACTGCGCTACCGGAGGAGGAGTCCATTGAGAAAGATAGTAGATTGCTTGCTTGCTCTCTTCCTCACCAACAACCGGTTGCAGATGCTTAATCTCCATCCTCTCCCTCCCCTGCATATAGCCCCTCCCTTTAGAAGGGTATTTGTAGAAAAAAAAATTGCAAGCTATAGCCAACATACACACACACACACAAGCGCAAACATAATTAAAAGTAGGTTGAAAAATAGCGCAAAACAAAGCATCTGAAAAAATGACAAAAAGAAGAAAAAAAAACATAAATCAAACTTATAGAAGAAGGATATGGATAAGAGGCAACACAGGTCGTGTAATAAATAATAGAGAAAGCTCTGTTCAAAACAGAGTGTAAGCAAGAGGCCAGAAAACAAAAAGAAAACACTTTAAACAAATCTAATTCATAAGGAAAGAGAGAGAGAGAGAGAGAAACCCATTAGCAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAAAACAACA---AACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTACACAAAGCAGAAAAAATAATCATTACATTGCCATTAGAAGAACCACCAAAAAGAAAGAAAAAAAAAACAAAAGTAGATACAAACCAGTAGTGTAAAGCAAAACAAACAAAAAGAGAGCGTAAACGCAGCATACATGTGAGAAAAAAGATGAAGAAAAAAAAGAAGCAAAATCCCAAGCACACAATACACACCCAGAGCCTACTACAACACAACCTACAAACAGCGCGTATTGGCTAAAAAGGGGAGAGATTGAGTTTCTAAGCAAACGGAGAAACAAAGTGTGCGTGTTGTCCTTGCCCCCCTTTGAAGTACTAGAAGAAGGACGTTGTGTCAAAGGAAGTGTGCGGGAGCGTGTGATGACAGAGTGCGGTCAGTTTGTGGCCTGTGCCAGGGAGGAAAAGAAGCAGCTAATAAAGGAAGGTGATAATATGTCCGTAAGACAGACGAGAACGCAGGGAGGAACCGCAAGTGGTTGAGTGTGTTTTAAAAAAGCATCAAAACCCATTGTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
[+] EMBL BM589537 [CCGGGGTGTGTAGATATTCAAAACACAGACACTGCGCTACCGGAGGAGGAGTCCATTGAGAAAGATAGTAGATTGCTTGCTTGCTCTCTTCCTCACCAACAACCGGTTGCAGATGCTTAATCTCCATCCTCTCCCTCCCCTGCATATAGCCCCTCCCTTTAGAAGGGTATTTGTAGAAAAAAAAATTGCAAGCTATAGCCAACATACACACACACACACAAGCGCAAACATAATTAAAAGTAGGTTGAAAAATAGCGCAAAACAAAGCATCTGAAAAAATGACAAAAAGAAGAAAAAAAAACATAAATCAAACTTATAGAAGAAGGATATGGATAAGAGGCAACACAGGTCGTGTAATAAATAATAGAGAAAGCTCTGTTCAAAACAGAGTGTAAGCAAGAGGCCAGAAAACAAAAAGAAAACACTTTAAACAAATCTAATTCATAAGGAAAGAGAGAGAGAGAGAGAGAAACCCATTAGCAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAAAACAACA AACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTACACAAAGCAGAAAAAATAATCATTACATTGCCATTAGAAGAACCACC ]
[+] EMBL BM628607 [ ccgCATTAGCAATGATACAGAGAAGAGAAGGA GAAAAAAGGAACGTTTTTAAAACAATAATAATGTAAAACAACAAGCAACAAACATGCACAC ]
[+] EMBL BM638569 [ ccgTGATGTGTTACACAAAGCAGAAAAAATAATCATTACATTGCAATTAGAAGAAACAACAAAAAGAAAGAAAAAAAAAACAAAAGTAGATACAAACCAGTAGTGTAAAGCAAAACAAACAAAAAGAGAGCGTAAACGCAGCATACATGTGAGAAAAAAGATGAAGAAAAAAAAGAAGCAAAATCCCAAGCACACAATACACACCCAGAGCCTACTACAACACAACCTACAAACAGCGCGTATTGGCTAAAAAGGGGAGAGATTGAGTTTCTAAGCAAACGGAGAAACAAAGTGTGCGTGTTGTCCTTGCCCCCCTTTGAAGTACTAGAAGAAGGACGTTGTGTCAAAGGAAGTGTGCGGGAGCGTGTGATGACAGAGTGCGGTCAGTTTGTGGCCTGTGCCAGGGAGGAAAAGAAGCAGCTAATAAAGGAAGGTGATAATATGTCCGTAAGACAGACGAGAACGCAGGGAGGAACCGCAAGTGGTTGAGTGTGTTTTAAAAAAGCATCAAAACCCATTGTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]
consensusID : consensus_5171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 904 fasta sequence
[AGAATCCCCGCGTTAATCTAATTCATAAGGAAAGCGAGAGAGTGAGAGAGAAACCCATTAGCAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAAAACAACAAACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTACACAAAGCAGAAAAAATAATCATTACACTTGCAATTAGAAGAAACAACAAAAAGAACGAAAAAAAAAACANAAGTAGATACAAAGCCAGTAGTGTAAAGCAAAACAAACAACNAAGAGAGCGTAAACGCAGCATACATGTGAGAAAAANNGATGANAGAAAAAAAAGAAGCAAAATCCCAAGCACACAATACACACCCAGAGCCTACTACAAAACAACCTACAAACAGCGCGTATTNGGCTAACNACAGGGAGAGAGAATTGCCGTTTTCCTAAGCACAACGGCAGAAAACACACGTGTGCCGTGTAAGTACCATTGACGCACCCCCTTNGAAAGNTACCTANGCAAGCAAAGCGACGTCTGTGTCAAAACNCGCACANTCGTGCCCGCGGGAGCCNGTGCATGGAAACTCGACACANGACAGTGGCCGAGCCAAGCACCGCGGCCTGCAGCACCCCNGGGATGGAAACCACCGCCGCGACGGGCGCAAACAAACAGCACAANCACGACCCCGCCCNCNACANGANTCAAACAACGGAGCAAAACAGGAGGGATGCGACACTANCACCTAANTGGGACCACCGNACCCANGCAACCAANGGACACCGNAACGACACCAGCCCACNCAGCCAAACGGAGCAAACCCACGGACCCAACGGCTGGCCCNTCCGCAACGACTGCCGCTACAACCAACACACAACAAGCCACACTTCAACACNCACCAC]
[+] EMBL AL694733 [AGAATCCCCGCGTTAATCTAATTCATAAGGAAAGCGAGAGAGTGAGAGAGAAACCCATTAGCAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAAAACAACAAACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTACACAAAGCAGAAAAAATAATCATTACACTTGCAATTAGAAGAAACAACAAAAAGAACGAAAAAAAAAACANAAGTAGATACAAAGCCAGTAGTGTAAAGCAAAACAAACAACNAAGAGAGCGTAAACGCAGCATACATGTGAGAAAAANNGATGANAGAAAAAAAAGAAGCAAAATCCCAAGCACACAATACACACCCAGAGCCTACTACAAAACAACCTACAAACAGCGCGTATTNGGCTAACNACAGGGAGAGAGAATTGCCGTTTTCCTAAGCACAACGGCAGAAAACACACGTGTGCCGTGTAAGTACCATTGACGCACCCCCTTNGAAAGNTACCTANGCAAGCAAAGCGACGTCTGTGTCAAAACNCGCACANTCGTGCCCGCGGGAGCCNGTGCATGGAAACTCGACACANGACAGTGGCCGAGCCAAGCACCGCGGCCTGCAGCACCCCNGGGATGGAAACCACCGCCGCGACGGGCGCAAACAAACAGCACAANCACGACCCCGCCCNCNACANGANTCAAACAACGGAGCAAAACAGGAGGGATGCGACACTANCACCTAANTGGGACCACCGNACCCANGCAACCAANGGACACCGNAACGACACCAGCCCACNCAGCCAAACGGAGCAAACCCACGGACCCAACGGCTGGCCCNTCCGCAACGACTGCCGCTACAACCAACACACAACAAGCCACACTTCAACACNCACCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5171#0 CCGGGGTGTGTAGATATTCAAAACACAGACACTGCGCTACCGGAGGAGGAGTCCATTGAG 60
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 AAAGATAGTAGATTGCTTGCTTGCTCTCTTCCTCACCAACAACCGGTTGCAGATGCTTAA 120
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 TCTCCATCCTCTCCCTCCCCTGCATATAGCCCCTCCCTTTAGAAGGGTATTTGTAGAAAA 180
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 AAAAATTGCAAGCTATAGCCAACATACACACACACACACAAGCGCAAACATAATTAAAAG 240
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 TAGGTTGAAAAATAGCGCAAAACAAAGCATCTGAAAAAATGACAAAAAGAAGAAAAAAAA 300
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 ACATAAATCAAACTTATAGAAGAAGGATATGGATAAGAGGCAACACAGGTCGTGTAATAA 360
consensus_5171#1 ------------------------------------------------------------
consensus_5171#0 ATAATAGAGAAAGCTCTGTTCAAAACAGAGTGTAAGCAAGAGGCCAGAAAACAAAAAGAA 420
consensus_5171#1 -----------------------------------------------------------A 1
*
consensus_5171#0 AACACTTTAAACAAATCTAATTCATAAGGAAAGAGAGAGAGAGAGAGAGAAACCCATTAG 480
consensus_5171#1 GAATCCCCGCGTTAATCTAATTCATAAGGAAAGCGAGAGAGTGAGAGAGAAACCCATTAG 61
* * ******************** ******* ******************
consensus_5171#0 CAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAA 540
consensus_5171#1 CAATGATACAGAGAAGAGAAGAAGGAAAAAAGGAACGTTTTTAAAACAATAATAATGTAA 121
************************************************************
consensus_5171#0 AACAACAAACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTAC 600
consensus_5171#1 AACAACAAACAAACATACACACGCAAACGTAGAAAAAAGAAAGTAGAAATGATGTGTTAC 181
************************************************************
consensus_5171#0 ACAAAGCAGAAAAAATAATCATTACA-TTGCCATTAGAAGAACCACCAAAAAGAAAGAAA 659
consensus_5171#1 ACAAAGCAGAAAAAATAATCATTACACTTGCAATTAGAAGAAACAACAAAAAGAACGAAA 241
************************** **** ********** ** ********* ****
consensus_5171#0 AAAAAAACAAAAGTAGATACAAA-CCAGTAGTGTAAAGCAAAACAAACAA-AAAGAGAGC 717
consensus_5171#1 AAAAAAACANAAGTAGATACAAAGCCAGTAGTGTAAAGCAAAACAAACAACNAAGAGAGC 301
********* ************* ************************** ********
consensus_5171#0 GTAAACGCAGCATACATGTGAGAAAAAAG-ATGAA-GAAAAAAAAGAAGCAAAATCCCAA 775
consensus_5171#1 GTAAACGCAGCATACATGTGAGAAAAANNGATGANAGAAAAAAAAGAAGCAAAATCCCAA 361
*************************** **** ************************
consensus_5171#0 GCACACAATACACACCCAGAGCCTACTACAACACAACCTACAAACAGCGCGTATTGG-CT 834
consensus_5171#1 GCACACAATACACACCCAGAGCCTACTACAAAACAACCTACAAACAGCGCGTATTNGGCT 421
******************************* *********************** * **
consensus_5171#0 AAAAA---GGGGAGAGATT----GAGTTTCTAAGCA-AACGG--AGAAACAAA-GTGTGC 883
consensus_5171#1 AACNACAGGGAGAGAGAATTGCCGTTTTCCTAAGCACAACGGCAGAAAACACACGTGTGC 481
** * ** ****** * * ** ******* ***** ***** * ******
consensus_5171#0 -GTGT---TGTCCTTGCC----CCCCTTTGAAG--------TACTAGAAGAAGGACGT-T 926
consensus_5171#1 CGTGTAAGTACCATTGACGCACCCCCTTNGAAAGNTACCTANGCAAGCAAAGCGACGTCT 541
**** * * *** * ****** *** * ** * * ***** *
consensus_5171#0 GTGTCAAAGGAAGTGT----------GCGGGAGCGTGTG-ATGACAGAGTGCGGTCAGTT 975
consensus_5171#1 GTGTCAAAACNCGCACANTCGTGCCCGCGGGAGCCNGTGCATGGAAACTCGACACANGAC 601
******** * ******** *** *** * * *
consensus_5171#0 TGTGGCCTGTGCCAGGGAGGAAAAGAAGCAGCTAATAAAGGAAGGTGATAATATGTCCGT 1035
consensus_5171#1 AGTGGCC-GAGCCAAGCACCGCGGCCTGCAGCACCCCNGGGATGG--AAACCACCGCCGC 658
****** * **** * * ***** *** ** * * * ***
consensus_5171#0 AAGACAGACGAGAACGCAGGGAGGAACCGCAA----GTGGTTGAGTGTGTTTTAAAAAAG 1091
consensus_5171#1 --GACGGGCGCAAACAAACAGCACAANCACGACCCCGCCCNCNACANGANTCAAACAACG 716
*** * ** *** * * ** * * * * * * ** ** *
consensus_5171#0 CATCAAAACCCATTGTACA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1150
consensus_5171#1 GAGCAAAACAGGAGGGATGCGACACTANCACCTAANTGGGACCACCGNACCCANGCAACC 776
* ****** * * ** * * * * * * * *
consensus_5171#0 GAGAGAGA---------------------------------------------------- 1158
consensus_5171#1 AANGGACACCGNAACGACACCAGCCCACNCAGCCAAACGGAGCAAACCCACGGACCCAAC 836
* ** *
consensus_5171#0 ------------------------------------------------------------
consensus_5171#1 GGCTGGCCCNTCCGCAACGACTGCCGCTACAACCAACACACAACAAGCCACACTTCAACA 896
consensus_5171#0 --------
consensus_5171#1 CNCACCAC 904
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||