These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence [CACGCGTCCGCCCACGCGTCCGGCGCGGCACACGGGACGCACAGGTTA--TTTTCTTGACTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCACAC-AAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCTCCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCCTGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCCCGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGAAGAAGTATCTCATCGACTACCGCTTCA] [+] EMBL BM613821 [CACGCGTCCGCCCACGCGTCCGGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGACTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCA CA CACACAAAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGC ] [+] EMBL BM588929 [ ccgGCGGCACACGGGACGCACAAGTTA TTTTCTTGTCTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCACCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCACAC Ac ] [+] EMBL BM644341 [ ccGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCTCAC AAAAATTCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACTGGAAAAACACCCTCCACACCGGAAGGGATGGCCCTCGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCATTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCGTCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCTCCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCCTGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCCCGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGAAGAAGTATCTCATCGACTACCGCTTCA] consensusID : consensus_5178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAACTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG] [+] EMBL AL694845 [AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAACTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5178#0 --------------------------------CACGCGTCCGCCCACGCGTCCG---GCG 25 consensus_5178#1 AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCG 60 ** * ** * * ** *** consensus_5178#0 CGGCACACGGGACGCACAGGTTATTTT--CTTG-ACTGGTG--TAGCGGCGCG-TACTAA 79 consensus_5178#1 CGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAA 120 *************************** **** ***** ** ******* ****** consensus_5178#0 -TTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCC-GG 137 consensus_5178#1 CTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGG 180 ******************************************************** ** consensus_5178#0 GAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTT-TGAATGTTCTTC 196 consensus_5178#1 GAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTC 240 *********************************************** ************ consensus_5178#0 CATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGC 256 consensus_5178#1 CATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGC 300 ************************************************************ consensus_5178#0 CGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAG 316 consensus_5178#1 CGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAG 360 ******************************************** *************** consensus_5178#0 CAGCAGCACACAAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAA-GTGATCGCACAGA 375 consensus_5178#1 CACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGA 420 ** **** * ********************************* ************* consensus_5178#0 TCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAA 435 consensus_5178#1 TCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG--------------- 465 ********************************************* consensus_5178#0 CCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGA 495 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 TGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGT 555 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 CGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGA 615 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 TGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCT 675 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 CCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCC 735 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 TGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCC 795 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 CGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGA 855 consensus_5178#1 ------------------------------------------------------------ consensus_5178#0 AGAAGTATCTCATCGACTACCGCTTCA 882 consensus_5178#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||