These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 820 fasta sequence [AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGACGTCGATCTTAACTTCA-CCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT] [+] EMBL BX607679 [AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCAAAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGACGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGGCTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAGAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGACGTCGATCTTAACTTCA CCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT] [+] EMBL BM644185 [ ccgGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGATCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGT ] [+] EMBL BM631958 [ cCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGTACGGGGCGGACTTTATGCGTAACAGCAGGGACTATCTGGGGGACGACGTCGATCTTAACTTTACCCCCGCACGGTTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTG ] consensusID : consensus_5180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCCGNGGTTTGAAACCCAAAACAGATAAGTGTGTGCANAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAATCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGAATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGTGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGGACTATCTGGGGGACG] [+] EMBL AL694881 [CCCGNGGTTTGAAACCCAAAACAGATAAGTGTGTGCANAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAATCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGAATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGTGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGGACTATCTGGGGGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5180#0 AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGC 60 consensus_5180#1 ------------------------------------------------------------ consensus_5180#0 AATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCGGAACGATG 120 consensus_5180#1 --------------CCCGNGGTTTGAAACCCAAAACAGATAA-GTGTGTGCANAACGATG 45 *** ** ************** ******** ******* consensus_5180#0 TTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCC-GTACTACG-GCAGG--CCCGAAA 176 consensus_5180#1 TTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAA 105 ************************************ ******** **** ** **** consensus_5180#0 TCAACAGCCCCGCATCACATACA-GCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAA 235 consensus_5180#1 TCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGA 165 *********************** ******* ************************* * consensus_5180#0 --GCAAAGGC-GACTCC-GGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAAC 291 consensus_5180#1 ATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAAC 225 ******** * **** ****************************************** consensus_5180#0 AAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAA 351 consensus_5180#1 AAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAA 285 ************************************************** ********* consensus_5180#0 AAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCC 411 consensus_5180#1 AAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCC 345 ****************************************** ******* ********* consensus_5180#0 ACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGC 471 consensus_5180#1 GCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGC 405 ** ************************* ***************** ************ consensus_5180#0 GATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATC-GTCCATAGCCTACTGGCTGAAGAA 530 consensus_5180#1 GACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAA 465 ** ************** ***************** ************************ consensus_5180#0 GCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGG-AAAAGGATGCAACGTACGCGCAG- 588 consensus_5180#1 GCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGT 525 *********************************** * ********************* consensus_5180#0 GCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATC 648 consensus_5180#1 GCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATC 585 ************************************************************ consensus_5180#0 CAGATGAGCCTGTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGAC 708 consensus_5180#1 CAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGG-ACTATCTGGGGGACG-- 642 *********** ***************************** *************** consensus_5180#0 GTCGATCTTAACTTCACCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAA 768 consensus_5180#1 ------------------------------------------------------------ consensus_5180#0 CAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT 820 consensus_5180#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||