These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 846 fasta sequence [AAGAATCCCCCGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG-TCGGCGAGCATTCGCGG-TTCGG-CTATGGGAA--CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGA-TCCGCCGAGCGTGGGGGGACAATTT] [+] EMBL AL930521 [AAGAATCCCCCGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTNGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTTCGCTCGGCGAGCATTCGCGGCTTCGGCCTATGGGCACNCGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCC ] [+] EMBL BX625202 [ acgTTTTATCAGAACGTAGACGTCTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAAGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGATTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG TCGGCGAGCATTCGCGG TTCGG CTATGGGAA CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCATTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGA TCCGCCGAGCGTGGG ] [+] EMBL BM591857 [ ccGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCATTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG TCGGCGAGCATTCGCGG TTCGG CTATGGGAA CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTGTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGACCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTACGCTGGGCCTTACCTTCACATCAACGATTCCGCCGAGCGTGGGGGGACAATTT] consensusID : consensus_5182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAATCGACACGTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCTGCCTCCGCCAACGCGCACGCN] [+] EMBL AL694899 [AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAATCGACACGTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCTGCCTCCGCCAACGCGCACGCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5182#0 --------------------------------------------------AAGAATCCCC 10 consensus_5182#1 AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAAT 60 * *** consensus_5182#0 CGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACA 70 consensus_5182#1 CGACAC-GTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACA 119 *** **************************************************** consensus_5182#0 AGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCG 130 consensus_5182#1 AGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCG 179 ************************************************************ consensus_5182#0 GCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTAC 190 consensus_5182#1 GCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTAC 239 ************************************************************ consensus_5182#0 GGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGA 250 consensus_5182#1 GGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGA 299 ************************************************************ consensus_5182#0 CCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACG 310 consensus_5182#1 CCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACG 359 ************************************************************ consensus_5182#0 GC-TTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGG-AGATGATCCCACCGGTGCGTT 368 consensus_5182#1 GCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTT 419 ** ********************************** ********************* consensus_5182#0 CGTTGGGTATCAGATGCGATCGT-TGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCG 427 consensus_5182#1 CGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCG 479 *********************** ************************************ consensus_5182#0 GTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATAC-TGATCAAAGCGCC-GCT 485 consensus_5182#1 GTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCT 539 ****************** ******************** ************* *** consensus_5182#0 GC-TCCGCGAA-GCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACG 543 consensus_5182#1 GCCTCCGCCAACGCGCACGCN--------------------------------------- 560 ** ***** ** ***** ** consensus_5182#0 TTCGATTACGTCGGCGAGCATTCGCGGTTCGGCTATGGGAACGATACGTCCCACTATCCG 603 consensus_5182#1 ------------------------------------------------------------ consensus_5182#0 TTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGC 663 consensus_5182#1 ------------------------------------------------------------ consensus_5182#0 AAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGG 723 consensus_5182#1 ------------------------------------------------------------ consensus_5182#0 ACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCG 783 consensus_5182#1 ------------------------------------------------------------ consensus_5182#0 ATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGATCCGCCGAGCGTGGGGGGACAA 843 consensus_5182#1 ------------------------------------------------------------ consensus_5182#0 TTT 846 consensus_5182#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||