cluster # 5186

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Anopheles gambiae
cluster # 5186 cluster # 5186 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5186#0 length = 627 sequences # 1

consensus_5186#1 length = 613 sequences # 3

consensusID : consensus_5186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [GGCAAGCGGCATAAGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGCACACGGGAACGCCGCTCAAATGCCGGCGACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATTTTACAAAATTCCTACGGGGGTTCAGGAACGGCGGACGATGGGACTACGTTCAAAAGAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGATGAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGCCCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCGGGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGGAAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCCGGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTATAAACCCGGCTCGCNACTTCCCGCAACCACTNCCCCGTGTAGTGCNCGCCANTAGACTTCNG]

[+] EMBL AL695014             [GGCAAGCGGCATAAGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGCACACGGGAACGCCGCTCAAATGCCGGCGACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATTTTACAAAATTCCTACGGGGGTTCAGGAACGGCGGACGATGGGACTACGTTCAAAAGAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGATGAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGCCCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCGGGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGGAAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCCGGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTATAAACCCGGCTCGCNACTTCCCGCAACCACTNCCCCGTGTAGTGCNCGCCANTAGACTTCNG]




>consensus_5186#0
GGCAAGCGGCATAAGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACT
AGCCTGTGCCTGAATGGCTGCACACGGGAACGCCGCTCAAATGCCGGCGACGGATGGGCA
CCCTGCTGAACGANGAGGAAGAGGACGAATTTTACAAAATTCCTACGGGGGTTCAGGAAC
GGCGGACGATGGGACTACGTTCAAAAGAAGTGACGACGAGGAAGATATCGTCGATTCCGA
CTTCAGTATTTGAGCGNAAAACCGATGAAGCCCCAATTTCCGACCGCGNGAGGAGGAAAC
CGGCGAAAGGGTACGGCACANACGGCCCGGAAACGGGTGGGGCACCGGGTGAACGAAAAG
GGCCATACTTCCGGNGGGAGAACCCGGGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCC
CGCGCCACAAAGGCGGAANACGGCGGAAACCNCCCGACAAGCGGCGGCAAAAATGTGCCC
CCGCATAACACGGAACCACGGATNCCGGAAACGTCGCCCTNGTGCAGCCCACGAACTGAC
CGCGGAGGTGCCCCCAAAAGGTTTATAAACCCGGCTCGCNACTTCCCGCAACCACTNCCC
CGTGTAGTGCNCGCCANTAGACTTCNG

consensusID : consensus_5186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 613
fasta sequence

                              [AGAATCGCCCCGAGGGTTTACGGAA-CAGGCAAGCGGCAT-AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCG-ACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCCAAGAAGCAGGCCCCCGCCAAAGCGAAGGAACCGAAGGCAAAAGCCGAACGACAGTCGACGCTGCGCAAGCGGCCCAAGTTTACCGTGATCGACTCGGGGCGCAAATCGTTCCGCAAGTCGACGGCGGCCAAAACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTCGAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA]

[+] EMBL AL931717             [AGAATCGCCCCGAGGGTTTACGGAA CAGGCAAGCGGCAT AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTA CCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCG ACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAA                                                                                                                                                                                                                                                                                    ]
[+] EMBL AL932339             [  AATCGCCACGAGG      NGAA CAGGCAAGCGGCAT AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCGNACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCCAAGAAGCAGGCCCCCGCCAAAGCGAAGGAACCGAAGGCAAA                                                                                                                                                                                          ]
[+] EMBL BM585961             [         ccggttGTTTACGGAACCAGGCAAGCGGCATAAGTTTTACTTCTAATTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCCAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGATGACGAGGAAGATATCGTCGATTCCG ACTTCAGCATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCGTATCGGGAACCGGCCCCCAAGAAGCAGACCCCCGCCAAAGCGAAGGAACCGAAGGCAAAAGCCGAACGACAGTCGACGCTGCGCAAGCGGCCCAAGTTTACCGTGATCGACTCGGGGCGCAAATCGTTCCGCAAGTCGACGGCGGCCAAAACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTCGAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA]




>consensus_5186#1
AGAATCGCCCCGAGGGTTTACGGAACAGGCAAGCGGCATAGCTTTACTTCTAACTTTTAG
CAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCC
GCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTT
ACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGA
ATGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTGACGAAAACGATGAGCCCA
TTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGA
CGAAGGCATATCGGGAACCGGCCCCCAAGAAGCAGGCCCCCGCCAAAGCGAAGGAACCGA
AGGCAAAAGCCGAACGACAGTCGACGCTGCGCAAGCGGCCCAAGTTTACCGTGATCGACT
CGGGGCGCAAATCGTTCCGCAAGTCGACGGCGGCCAAAACGGCCGCCACGCAGAGCCGGC
TCAAGCAGCGGTTCGAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACA
TCCCGACGCAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5186#0      ---------------------------GGCAAGCGGCATAAGCTTTACTTCTAACTTTTA 33
consensus_5186#1      AGAATCGCCCCGAGGGTTTACGGAACAGGCAAGCGGCATA-GCTTTACTTCTAACTTTTA 59
                                                 ************* *******************

consensus_5186#0      GCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGC-ACACGGGAACG 92
consensus_5186#1      GCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCC-GAATGGCTGCCACACGGGAACG 118
                      ************************************* ********** ***********

consensus_5186#0      CCGCTCAAATGCCGGC-GACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATT 151
consensus_5186#1      CCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATT 178
                      **************** ********* *************** *****************

consensus_5186#0      TTACAAAA-TTCCTACGGGGG-TTCAG--GAACGGCGGACGATGG-GACTACGTTCAAAA 206
consensus_5186#1      TTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAA 238
                      ******** ********* ** *****    ************** **************

consensus_5186#0      GAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGAT 266
consensus_5186#1      GAA-TGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATT--GACGAAAA--CGAT 293
                      *** ****************************************    ** ***  ****

consensus_5186#0      GAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGC 326
consensus_5186#1      GAG---CCCATTTCCGAC---GCGGAGGAGGAACCGGCGAAAGG---TAGCAAAC---GC 341
                      **    ** *********   * *  *  * *************     *** *    **

consensus_5186#0      CCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCG 386
consensus_5186#1      CGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCC------AAGAAGCAG 395
                      * * *   ***   **   **   * *      *  **   *  *       **** * *

consensus_5186#0      GGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGG 446
consensus_5186#1      GCCCCCGCCAAAGCGAAGGAACCGAAGGCA------------AAAGCCGAACGACAGTCG 443
                      * **** ******  ***   * *  ***             **** ** *  ** *  *

consensus_5186#0      AAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCC 506
consensus_5186#1      ACGCTGCGCAA------GCGGCCCAAGTTTACCGTGAT-CGACTCGGGGCGCAAATCGTT 496
                      *  *  * * *      *****  ** * * **        ** ***  *          

consensus_5186#0      GGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTAT 566
consensus_5186#1      CCGCAAGTCGACGGCGGCCAAA--ACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTC 554
                          * **** *   *  **    ***  *    *** ***  * * * *  **   *  

consensus_5186#0      AAACCCGGCTCGCNACTTCCCGCAACCA-CTNCCCCGTGTAGTGCNCGCCANTAGACTTC 625
consensus_5186#1      GAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA- 613
                       *  * *    *   *   *   *  ** *    * * * *** *   **     *    

consensus_5186#0      NG 627
consensus_5186#1      --