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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1056 fasta sequence
[GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAG-GCAAAAGTGTACC-GTGCGCTTTTCGCGGTGATCT-CTGCGCGA-TTTTGTTTGTGAAGCGTACTCTAAACAGCAG-GCAGGACTAGAGCTGGACC-GAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTAC-AAACCGTACGTGC-TGGC-GGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGATACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACTCCACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGCAACACNCACACCTGGACCGCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATCTACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCACATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNTNGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACCCCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNCCNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAACGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA]
[+] EMBL BX468543 [GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAG GCAAAAGTGTACC GTGCGCTTTTCGCGGTGATCT CTGCGCGA TTTTGTTTGTGAAGCGTACTCTAAACAGCAG GCAGGACTAGAGCTGGACC GAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTAC AAACCGTACGTGC TGGC GGTGCTGAC ]
[+] EMBL AL695217 [ ccgaggttAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGTGCAAAAGTGTACCTGTGCGCTTTTCGCGGTGATCTACTGCGCGATTTTTGTTTGTGAAGCGTACTCTAAACAGCAGTGCAGGACTAGAGCTGGACCTGAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAA CAAAAATGCAGTCCTCAGTGATGGAGAAGCTAAGCTTCCTGTACAAAACCGTACGTGCTTGGCTGGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGATACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACTCCACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGCAACACNCACACCTGGACCGCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATCTACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCACATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNTNGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACCCCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNCCNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAACGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA]
consensusID : consensus_5194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CCGAAGCGGACGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGCGCGATTTTTTTGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCGTGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGTACGTGCTGGCGGTGCTGACGATCGGTTACATTGCCGGCGAGCTGGGCCACTACCTGATCGGCGTCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAGTAAGTTGTTATGGGATCTGCATGCTAAGGTTAGCGTAGTGTAACGCATGCTT]
[+] EMBL BM606903 [CCGAAGCGGACGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGCGCGATTTTTTTGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCGTGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGTACGTGCTGGCGGTGCTGACGATCGGTTACATTGCCGGCGAGCTGGGCCACTACCTGATCGGCGTCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAGTAAGTTGTTATGGGATCTGCATGCTAAGGTTAGCGTAGTGTAACGCATGCTT]
consensusID : consensus_5194#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CCGCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGCCACCAGCAGCACATCAACGGCACAGTCTACTGCGAGTGGAACTACAATGGGCTCGGGCTGGAGTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTACGGTGATGGGCGTCGTGCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGCTGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGTACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGCTCGCCACCGGCATCATGTCCGACATCTTCCCCGAGAGCAAGCGGGCCCTGGTGATGGCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTCCCGGTCGGCCGTTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTGCTACTATGGTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGACCGGC]
[+] EMBL BM592226 [CCGCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGCCACCAGCAGCACATCAACGGCACAGTCTACTGCGAGTGGAACTACAATGGGCTCGGGCTGGAGTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTACGGTGATGGGCGTCGTGCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGCTGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGTACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGCTCGCCACCGGCATCATGTCCGACATCTTCCCCGAGAGCAAGCGGGCCCTGGTGATGGCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTCCCGGTCGGCCGTTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTGCTACTATGGTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGACCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5194#0 GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCG 60
consensus_5194#1 ------CCGAAGCGGA--CGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCG 52
consensus_5194#2 ----------------------------------------------------CCGCACCT 8
* * **
consensus_5194#0 GAGAGGTTCTCTCGATCGAGCTCGACAGTGT--ATCGTGACGGAACAGTGCGCCATACCA 118
consensus_5194#1 GAGAGGTTCTCTCGATCGAGCTCGACAGTGT--ATCGTGACGGAACAGTGCGCCATACCA 110
consensus_5194#2 CGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCG 68
* * * * ******** *** * *** * * * * *******
consensus_5194#0 GTGTCCAGTGATCGAGTGCTAG-AGCCTAGCTCGCCCCAATTGTTGGTGG-TGTGTAGAA 176
consensus_5194#1 GTGTCCAGTGATCGAGTGCTAG-AGCCTAGCTCGCCCCAATTGTTGGTGG-TGTGTAGAA 168
consensus_5194#2 ACTTCCTGCG-CCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGC 127
*** * * * * *** *** ** *** ** * * * *
consensus_5194#0 CAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCT 236
consensus_5194#1 CAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCT 228
consensus_5194#2 CACCAGCAGCACATCAACGGCACAG---------TCTACTGCGAGTG----GAACTACAA 174
** *** * *** * * * ** * **** *** *
consensus_5194#0 TAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTCTGC-GCGATTTTGTT 295
consensus_5194#1 TAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGC-GCGATTTT-TT 286
consensus_5194#2 TGGGCTCGGGCTGGA---GTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTAC 231
* * * * * * *** * *** ** * ** ** * ** * **
consensus_5194#0 TGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGACCGAGCTCCAACCCAACCG 355
consensus_5194#1 TGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCG 346
consensus_5194#2 GGTGATGGGCGTCGT----GCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGC 287
**** * * * ** * * * * * * * * * *
consensus_5194#0 TGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAG- 414
consensus_5194#1 TGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAG- 405
consensus_5194#2 TGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGT 347
** * ** * ** ** * * ** * * * ** ** ** **
consensus_5194#0 -----CAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGT 469
consensus_5194#1 -----CAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGT 460
consensus_5194#2 ACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGC 407
** * * * *** * * ****** * * * * *** ***
consensus_5194#0 ACGTGCTGGCGGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGA 529
consensus_5194#1 ACGTGCTGGCGGTGCTGACG-ATCGGTTA-CAT-TGCCGGCGAGCTGGGCCACTACCTGA 517
consensus_5194#2 TC--GCCACCGGCAT---CATGTCCGACATCTT--CCCCGAGAGCAAG--CGGGCCCTGG 458
* ** *** * ** * * * * ** * **** * * ****
consensus_5194#0 TACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACT--CC 587
consensus_5194#1 T-CGGCGTCACCTCGAAAGC-GACCGCCAT-CGAGCTGGACTACGGTGATCAGGCCTGCC 574
consensus_5194#2 TGATG-GCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTC---CCGGTC 514
* * * ** ** ** * * * * * * * * *
consensus_5194#0 ACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGC--AACACNCACACCTGGACC 645
consensus_5194#1 AGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCA 634
consensus_5194#2 GGCCG--TTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTG-------- 564
* * * * * * **
consensus_5194#0 GCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATC 705
consensus_5194#1 TCGAACACGAGTAAG-TTGTTATGGGAT-CTGCATGCTAAGGTTAGCGTAGTGTAACGCA 692
consensus_5194#2 -CTACTATG-GTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGAC-CGGC-------- 613
* * * * * * ** ** * * * * *
consensus_5194#0 TACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCAC 765
consensus_5194#1 TGCTT------------------------------------------------------- 697
consensus_5194#2 ------------------------------------------------------------
consensus_5194#0 ATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNT 825
consensus_5194#1 ------------------------------------------------------------
consensus_5194#2 ------------------------------------------------------------
consensus_5194#0 NGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACC 885
consensus_5194#1 ------------------------------------------------------------
consensus_5194#2 ------------------------------------------------------------
consensus_5194#0 CCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNC 945
consensus_5194#1 ------------------------------------------------------------
consensus_5194#2 ------------------------------------------------------------
consensus_5194#0 CNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAA 1005
consensus_5194#1 ------------------------------------------------------------
consensus_5194#2 ------------------------------------------------------------
consensus_5194#0 CGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA 1056
consensus_5194#1 ---------------------------------------------------
consensus_5194#2 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||