These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1608 fasta sequence [CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTCCGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGCTCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGTGATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGGCGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCACCTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCTCTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTTCGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAGTCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCATCTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCAAAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGCTTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTCGAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACACGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTTATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTTGAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACTGTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTATTATTTCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTCGCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATGGAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTGTGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC] [+] EMBL AL695335 [CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTCCGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGCTCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGTGATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGGCGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCACCTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCTCTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTTCGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAGTCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCATC ] [+] EMBL BM621105 [ ccgctaGTGTGCTTTCTCACCACCAGG CACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGCCTCGGTTAGTAATGCCATCTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCAAAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGCTTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTCGAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACACGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTTATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTTGAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACTGTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCA ] [+] EMBL BM638691 [ ccgCGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTATTATTTCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTCGCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATGGAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTGTGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC] consensusID : consensus_5199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [TGGGGGCGAGAAGCATGATCCAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTATTATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTCGCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTGATGGAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTGTGTTGGAAGGTATGGTATG] [+] EMBL BX627251 [TGGGGGCGAGAAGCATGATCCAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTATTATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTCGCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTGATGGAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTGTGTTGGAAGGTATGGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5199#0 CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTC 60 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGC 120 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 TCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGT 180 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGG 240 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCAC 300 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCT 360 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTT 420 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAG 480 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 TCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGC 540 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 TCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCAT 600 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCA 660 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 AAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGC 720 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 TTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTC 780 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACA 840 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 CGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTT 900 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 ATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTT 960 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACT 1020 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 GTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTAT 1080 consensus_5199#1 ------------------------------------------------------------ consensus_5199#0 AATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAA 1140 consensus_5199#1 ------------------------------TGGGGGCGAGAAGCATGATCCAAAAAAAAA 30 ****************************** consensus_5199#0 AAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTAT 1200 consensus_5199#1 --GAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTAT 88 *************************************** ****************** consensus_5199#0 TATT---TCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGT 1257 consensus_5199#1 TATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGT 148 **** ******** ************ ******************************* consensus_5199#0 TATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGC 1317 consensus_5199#1 TATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGC 208 ****************************************** ***************** consensus_5199#0 CATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTC 1377 consensus_5199#1 CATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTC 268 **************************** ********************** ******** consensus_5199#0 GCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACT---CTCTGAAGCAT 1434 consensus_5199#1 GCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCAT 328 *********************** ********************** *********** consensus_5199#0 AGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATG 1494 consensus_5199#1 AGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTT-----------GATG 377 ********************************************* **** consensus_5199#0 GAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTG 1554 consensus_5199#1 GAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTG 437 ********************* ****** ******* ************* ******** consensus_5199#0 TGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC 1608 consensus_5199#1 TGTTGGAAGGTATGGTATG----------------------------------- 456 ************* * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||