These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_52#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAATGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATTCGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGATGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCATGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAACAGAGTACATGAGCAAAGGATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACACATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTTAGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACT] [+] EMBL BX617327 [CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAATGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATTCGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGATGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCATGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAACAGAGTACATGAGCAAAGGATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACACATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTTAGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACT] consensusID : consensus_52#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACTGGTGATAGCAGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACAAAACGGACATGTGGAGTTTTGGAATTCTACTATGGGAAATCTATTCATTCGGACGCGTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTTTCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTGAAACACGTTGGCAGTGGTTACAAAATGGAAGCCCCCGAAGGTTGCCCACCGGAGATCTATGAAATGATGCGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCGAGCTGAAGCGGCG] [+] EMBL BM630175 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACTGGTGATAGCAGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACAAAACGGACATGTGGAGTTTTGGAATTCTACTATGGGAAATCTATTCATTCGGACGCGTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTTTCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTGAAACACGTTGGCAGTGGTTACAAAATGGAAGCCCCCGAAGGTTGCCCACCGGAGATCTATGAAATGATGCGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCGAGCTGAAGCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_52#0 CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAA 60 consensus_52#1 -----------------------------------------CCGCGGACGCGTGGGCGGA 19 **** ** * consensus_52#0 TGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATT 120 consensus_52#1 CGCGTGGG---TCGAGATCTGG---CTGCC-CGCAACGTGCTCATTTCCGAGGATTGTGT 72 * **** ** **** * **** * ** * *** * *** * * consensus_52#0 CGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGA 180 consensus_52#1 CGCGAAGGTG--TCCGATTTTGGATTGGCGCGCGACGAGCGTTAT---ACTGGTGATAGC 127 ** * * ** * * * * *** ** * ** * * ** *** * consensus_52#0 TGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCA 240 consensus_52#1 AGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACA 187 ** ** * * ** * ** * * * ** * * * * ** consensus_52#0 TGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAAC 300 consensus_52#1 AAACGGACATGTGGAGTTT--TGGAATTCTACT--ATGGGAAATCTATTCATTCGGACGC 243 * * ** ***** *** ** ** * * * ** * ** ** * * consensus_52#0 AGA--GTACATGAGCAAAG-GATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACA 357 consensus_52#1 GTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTT 303 * *** *** * * ** * ** * * * ** ** consensus_52#0 CATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTT 417 consensus_52#1 TCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTG 363 * * ** * * ******** * ** * * ** * consensus_52#0 AGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGA 477 consensus_52#1 AAACACGTTGGCAGTGGTTA--CAAAATGGAAGCCCCCGAAGGTTGCCCAC--CGGAGAT 419 * * ** **** * * * ** **** * *** ** * *** consensus_52#0 TTGTGTCGCGAAGGTGTCCGATTTTGGAT-TGGCGCGCGACGAGCGTTATACT------- 529 consensus_52#1 CTATGAAATGATG-CGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCG 478 * ** ** * *** * **** *** ** *** ***** ** consensus_52#0 ------------- consensus_52#1 AGCTGAAGCGGCG 491 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||