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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence
[ACGCAAATTTTATTTGCAAAGAAATTGTTACACTTTCTGCCCCGAGTTGCGCGTGCCATGCGTGCATTGTGTGCAGTAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAATGCACACGCTTCTTGCACACCGGGGCGTTCAATCGCTGTCACGGGGTGTTGTATTGATTTCTTAAAAAAAACAAAACAAAAAAGTTTGAACGTATTTTTTACACAATCGCACCAAATACTTAATGCAGTTAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAGACGCACACAGCTCCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCGCTACCAGAAAAAGTTAGAAAGCTTTTGAACAGTAGTGGGTGACGGAGGAGAGGGATTTGTAATGTTTTGTGCGCGACTAAAAACGGAGCTGAAATACATGTTGACACGTGCCCCTTTGTGATACATTTCACACACCGCAACTACTAGTGCTACCTTCCGTTTCCTTGTTTTTGTTTATACAACACGTTTTGTTCTACTTACACGCGTACAGCATCTTACTTCTTCCTTGCGTTTCTTCCAGCGCTTCACATCCTGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCAGCATTTTTTCTTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCACACACACCCATACCTACGCCTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGTGTGATGTACTGCTTCCTGGCAGCCGTGGATATAGACCACCAAATATCTTCCTCGTTCCATTCTTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGCTGTGGTTGTTATCTCGAATAGGGTTGTAAC]
[+] EMBL CNS09DPQ [ACGCAAATTTTATTTGCAAAGAAATTGTTACACTTTCTGCCCCGAGTTGCGCGTGCCATGCGTGCATTGTGTGCAGTAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAATGCACACGCTTCTTGCACACCGGGGCGTTCAATCGCTGTCACGGGGTGTTGTATTGATTTCTTAAAAAAAACAAAACAAAAAAGTTTGAACGTATTTTTTACACAATCGCACCAAATACTTAATGCAGTTAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAGACGCACACAGCTCCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCGCTACCAGAAAAAGTTAGAAAGCTTTTGAACAGTAGTGGGTGACGGAGGAGAGGGATTTGTAATGTTTTGTGCGCGACTAAAAACGGAGCTGAAATACATGTTGACACGTGCCCCTT ]
[-] EMBL CNS09DPP [ TCCTGCGTTCTGCCTATCGCTGTATAAAAGACGCACACAGCTCCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCGCTACCAGAGAAAGTGAGAGAGCTTTTGAACAGTAGTGGGTGACGGAGGAGAGGGATTTGTAATGTTTTGTGCGCGACTGAAAACGG GCTGAAATACATGTTGACACGTGCGCGTGTGTGATACATTTCACACACCGCAACTACTAGTGCTACCTTCCGTTTCCTTGTTTTTGTTTATACAACACGTTTTGTTCTACTTACACGCGTACAGCATCTTACTTCTTCCTTGCGTTTCTTCCAGCGCTTCACATCCTGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCAGCATTTTTTCTTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCACACACACCCATACCTACGCCTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGTGTGATGTACTGCTTCCTGGCAGCCGTGGATATAGACCACCAAATATCTTCCTCGTTCCATTCTTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGCTGTGGTTGTTATCTCGAATAGGGTTGTAAC]
consensusID : consensus_5200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[TTCTTCCAGCGCTTCACATATGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCAGCATTTTTTGTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCACACACACCCATACCTACGCCTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGTGTGATGTACTGCTTCCTGGCAGCCGTGGATGTAGACCACCAAGTATCTTCCTCTTCCATTATTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGCTGTGGTTTGTTATCTTCGAATAAAGCAGGTAAAATTGGTATGCTATTGTGGTGGTCCACTGTGCGGTAGACTTGGCGGAGCACCAGGTAGCGTAGGGTAGGCTGATTGATGTAGGATATGCGGGGGTAGCTTCGGACCGTCCTCGGCCTTCTCCTCCTCTCGCCGCTTCAGACAAGCCGCCTTCGGGTTTAGATTACGCTCTCGCACTTGCTGCTCGAGAGTCATTATCACTTCTACAGCCATGTTCAGTATGCCCAGCTTGGTCTGTGGTTTGTCTGATTTCAGGTGCGACATGCACATGCGTCCCAGCTCCTTCAACGCCTCATTAATATCCCGAATACGTATTGATAAATGATAAATCGG]
[-] EMBL BM586278 [TTCTTCCAGCGCTTCACATATGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCAGCATTTTTTGTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCACACACACCCATACCTACGCCTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGTGTGATGTACTGCTTCCTGGCAGCCGTGGATGTAGACCACCAAGTATCTTCCTCTTCCATTATTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGCTGTGGTTTGTTATCTTCGAATAAAGCAGGTAAAATTGGTATGCTATTGTGGTGGTCCACTGTGCGGTAGACTTGGCGGAGCACCAGGTAGCGTAGGGTAGGCTGATTGATGTAGGATATGCGGGGGTAGCTTCGGACCGTCCTCGGCCTTCTCCTCCTCTCGCCGCTTCAGACAAGCCGCCTTCGGGTTTAGATTACGCTCTCGCACTTGCTGCTCGAGAGTCATTATCACTTCTACAGCCATGTTCAGTATGCCCAGCTTGGTCTGTGGTTTGTCTGATTTCAGGTGCGACATGCACATGCGTCCCAGCTCCTTCAACGCCTCATTAATATCCCGAATACGTATTGATAAATGATAAATCGG]
consensusID : consensus_5200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[ATCACAGAAGGATAGTCCTCTATCAGCCTNCCCCTGGCTGTGTGCTATCTGCTGCTAGCGTAATGTTGTACGCCTAATGTTTATTTTGTAAAGAAATGGTTACACTTTCTGCCCCGAGTTGCGCGTGTCATGCGTGCATTATTGTGTGCAATAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAACACACACGCTTCTTGCACACCGGGGCGTTCAATCGCTGTCAAGGGGTGTTGTATGTGATTTCTTAAAGAAAGAAAACAGAACAAAAAAGTTTGAACGTATTTTTTACACAATCGCACCNAAATACTTAATGCATTAAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAGACGCACACAGCTCCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCGCTACCAGTGAAAGTGAGAGAGCTTTTGAACAGTAGTGGGGGGAGACGGAGGAGAGGGATTTGTAATGTTTTGCGCGCGACTGAAAACGGGCTGAAATACATGTTGACACGTGCGCGTGTGTGATACATTTCACACACCCAACNACTAGTGCTACCTTCCGTTTTTAAACG]
[-] EMBL AL695404 [ATCACAGAAGGATAGTCCTCTATCAGCCTNCCCCTGGCTGTGTGCTATCTGCTGCTAGCGTAATGTTGTACGCCTAATGTTTATTTTGTAAAGAAATGGTTACACTTTCTGCCCCGAGTTGCGCGTGTCATGCGTGCATTATTGTGTGCAATAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAACACACACGCTTCTTGCACACCGGGGCGTTCAATCGCTGTCAAGGGGTGTTGTATGTGATTTCTTAAAGAAAGAAAACAGAACAAAAAAGTTTGAACGTATTTTTTACACAATCGCACCNAAATACTTAATGCATTAAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAGACGCACACAGCTCCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCGCTACCAGTGAAAGTGAGAGAGCTTTTGAACAGTAGTGGGGGGAGACGGAGGAGAGGGATTTGTAATGTTTTGCGCGCGACTGAAAACGGGCTGAAATACATGTTGACACGTGCGCGTGTGTGATACATTTCACACACCCAACNACTAGTGCTACCTTCCGTTTTTAAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5200#0 ------------------------------------------------------------
consensus_5200#2 ---------------------------------------------ATCACAGAAGGATAG 15
consensus_5200#1 TTCTTCCAGCGCTTCACATATGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCAG 60
consensus_5200#0 ------------------------------------------------------------
consensus_5200#2 --TCCTCTATCAGCC--TNCCCCTGGCTGTGTGCTATCTGCTGCTAGC-GTAATGTTGTA 70
consensus_5200#1 CATTTTTTGTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCACA 120
consensus_5200#0 -AC-GCAAATTTTATTT-GCAAAGAAATTGTTACACTTTCTGCCCCGAG--TTGCGCGTG 55
consensus_5200#2 CGC-CTAATGTTTATTTTGTAAAGAAATGGTTACACTTTCTGCCCCGAG--TTGCGCGTG 127
consensus_5200#1 CACACCCATACCTACGC-CTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGTG 179
* * ** *** ** *** * ** ** * ***
consensus_5200#0 CCATGCGTGCATT---GTGTGCAGTAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAA 112
consensus_5200#2 TCATGCGTGCATTATTGTGTGCAATAAAATCGCCCTAGCCTAGTTCTGGTTCACCTAAAA 187
consensus_5200#1 TGATGTACTGCTTCCTGGCAGCCGTGGATGTAGACCACCAAGTATCTTCCTCTTCCATTA 239
*** ** * ** * * * * * *** ** * * *
consensus_5200#0 TGCACAC--GCTTCTTGCAC--ACCGGGGCGTTCAATCGCTGTCACGGGGTGTTGTA-T- 166
consensus_5200#2 CACACAC--GCTTCTTGCAC--ACCGGGGCGTTCAATCGCTGTCAAGGGGTGTTGTA-TG 242
consensus_5200#1 TTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGCTG 299
* * **** * * ** ** * *** * * ***** *
consensus_5200#0 TGATTTCTTAAAA--AAA----ACAAAACAAAAAAGTTTGAACGTATTTTT-TACACAAT 219
consensus_5200#2 TGATTTCTTAAAG--AAAGAAAACAGAACAAAAAAGTTTGAACGTATTTTT-TACACAAT 299
consensus_5200#1 TGGTTTGTTATCTTCGAATAAAGCAGGTAAAATTGGTATGCTATTGTGGTGGTCCACTGT 359
** *** *** ** ** *** ** ** * * * * *** *
consensus_5200#0 CGCACCAAA-TACTTAATGCAGTTAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAG 278
consensus_5200#2 CGCACCNAAATACTTAATGCATTAAGTATTTCCTGCGTTCTGCCTATCGCTGTATAAAAG 359
consensus_5200#1 -GCGGTAGACTTGGCGGAGCACCAGGTA--GCGTAGGGTAGGCTGATTGATGTAGGATAT 416
** * * *** *** * * * * ** ** * **** * *
consensus_5200#0 ACGCACACAGCT-----CCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCG 333
consensus_5200#2 ACGCACACAGCT-----CCTTCTGCACTGTCCGCTGATTCGCACTGTCCAACAGTGGCCG 414
consensus_5200#1 GCGGGGGTAGCTTCGGACCGTCCTCGGCCTTCTCCTCCTCTCGCCGCTTCAGACAAGCCG 476
** **** ** ** * * * * ** * * * * * ****
consensus_5200#0 CTACCAGAAAAAGTTAGAAAGCTTTTGAACAGTAGTGGGTG---ACGGAGG-----AGAG 385
consensus_5200#2 CTACCAGTGAAAGTGAGAGAGCTTTTGAACAGTAGTGGGGGGAGACGGAGG-----AGAG 469
consensus_5200#1 CCTTCGGGTTTAGATTACGCTCTCGCACTTGCTGCTCGAGAGTCATTATCACTTCTACAG 536
* * * ** ** * * * * * **
consensus_5200#0 GGATTTGTAATGTTTTGTGCGCGACTAAAAACGGAGCTGAAATACATGTTGACACGTGCC 445
consensus_5200#2 GGATTTGTAATGTTTTGCGCGCGACTGAAAACGG-GCTGAAATACATGTTGACACGTGCG 528
consensus_5200#1 CCATGTTCAGTATGCCCAGCTTGGTCTGTGGTTTGTCTGATTTCAGGTGCGACATGCACA 596
** * * * * ** * **** * **** * *
consensus_5200#0 CCTTTGTGATACATTTCACACACCGCAACTACTAGTGCTACCTTCCGTTTCCTTGTTTTT 505
consensus_5200#2 CGTGTGTGATACATTTCACACACC-CAACNACTAGTGCTACCTTCCGTTTTTAAACG--- 584
consensus_5200#1 TGCGTCCCAGCTCCTTCA-ACGCC-TCATTAATATCCCGAATACGTATTGATAAATGATA 654
* * **** ** ** * * ** * * **
consensus_5200#0 GTTTATACAACACGTTTTGTTCTACTTACACGCGTACAGCATCTTACTTCTTCCTTGCGT 565
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 AATCGG------------------------------------------------------ 660
consensus_5200#0 TTCTTCCAGCGCTTCACATCCTGTACACTTTATGCTTCCGTGCTTCGTCCTAACATGCCA 625
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 ------------------------------------------------------------
consensus_5200#0 GCATTTTTTCTTAATTCCATTTTTCCTATTGTGCTTCACTCGCTTCGATTTGTCGCCCCA 685
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 ------------------------------------------------------------
consensus_5200#0 CACACACCCATACCTACGCCTAAACTAAACACCTTTCTTAACCCTTGAAGGTTTTTGTGT 745
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 ------------------------------------------------------------
consensus_5200#0 GTGATGTACTGCTTCCTGGCAGCCGTGGATATAGACCACCAAATATCTTCCTCGTTCCAT 805
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 ------------------------------------------------------------
consensus_5200#0 TCTTTTATCTAATTACTTGTATTGGACTGGTTGTGCGGATTCTGCCCGTAAGAGTTGTGC 865
consensus_5200#2 ------------------------------------------------------------
consensus_5200#1 ------------------------------------------------------------
consensus_5200#0 TGTGGTTGTTATCTCGAATAGGGTTGTAAC 895
consensus_5200#2 ------------------------------
consensus_5200#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||